Mercurial > repos > iuc > hmmer_jackhmmer

diff jackhmmer.xml @ 4:793967b6ae8a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
author iuc
date Mon, 11 Jun 2018 15:51:14 -0400
parents 036df14999e8
children 5113c71c7031
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--- a/jackhmmer.xml	Sat Apr 07 03:48:57 2018 -0400
+++ b/jackhmmer.xml	Mon Jun 11 15:51:14 2018 -0400
@@ -13,7 +13,6 @@
 @HSSI@
 @THRESHOLDS@
 @ACCEL_HEUR@
-@MCSS@
 @ARSWS@
 @AEEWS@
 @PRIOR@
@@ -36,7 +35,6 @@
     <expand macro="hssi"/>
     <expand macro="thresholds_xml"/>
     <expand macro="accel_heur_xml"/>
-    <expand macro="mcss"/>
     <expand macro="arsws"/>
     <expand macro="aeews"/>
     <expand macro="prior"/>
@@ -45,7 +43,7 @@
     <expand macro="seed"/>
   </inputs>
   <outputs>
-    <data name="output" format="txt" label="PHMMER search of $seqfile.name in $seqdb.name"/>
+    <data name="output" format="txt" label="JACKHMMER search of $seqfile.name in $seqdb.name"/>
     <data name="tblout" format="txt" label="Table of per-sequence hits from HMM matches of $seqfile.name in $seqdb.name">
       <filter>oformat and 'tblout' in oformat</filter>
     </data>
@@ -82,7 +80,6 @@
 @HSSI_HELP@
 @THRESHOLDS_HELP@
 @ACCEL_HEUR_HELP@
-@MCSS_HELP@
 @ARSWS_HELP@
 @AEEWS_HELP@
 @PRIOR_HELP@