Mercurial > repos > iuc > hmmer_nhmmer
annotate test-data/phmmer.out @ 4:be0cc39776f9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
author | iuc |
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date | Mon, 11 Jun 2018 15:52:05 -0400 |
parents | f239ab5f45f4 |
children | b28e8ed99424 |
rev | line source |
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f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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1 # phmmer :: search a protein sequence against a protein database |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
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2 # HMMER 3.2 (June 2018); http://hmmer.org/ |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
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3 # Copyright (C) 2018 Howard Hughes Medical Institute. |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
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4 # Freely distributed under the BSD open source license. |
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f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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5 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - |
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be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
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6 # query sequence file: /tmp/tmpp4O0Ju/files/000/dataset_45.dat |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
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7 # target sequence database: /tmp/tmpp4O0Ju/files/000/dataset_46.dat |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
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8 # per-seq hits tabular output: /tmp/tmpp4O0Ju/files/000/dataset_48.dat |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
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9 # per-dom hits tabular output: /tmp/tmpp4O0Ju/files/000/dataset_49.dat |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
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10 # pfam-style tabular hit output: /tmp/tmpp4O0Ju/files/000/dataset_50.dat |
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f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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11 # max ASCII text line length: unlimited |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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12 # Vit filter P threshold: <= 0.001 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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13 # Fwd filter P threshold: <= 1e-05 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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14 # random number seed set to: 4 |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
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15 # number of worker threads: 1 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
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16 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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17 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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18 Query: MYG_ESCGI [L=153] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
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19 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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20 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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21 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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22 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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23 1.9e-97 310.4 5.6 2.1e-97 310.3 5.6 1.0 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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24 3.2e-11 30.7 0.1 3.5e-11 30.6 0.1 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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25 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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changeset
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26 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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27 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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28 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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29 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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30 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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31 1 ! 310.3 5.6 2.1e-97 2.1e-97 1 153 [] 2 154 .] 2 154 .] 1.00 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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32 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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33 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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34 == domain 1 score: 310.3 bits; conditional E-value: 2.1e-97 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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35 MYG_ESCGI 1 vlsdaewqlvlniwakveadvaghgqdilirlfkghpetlekfdkfkhlkteaemkasedlkkhgntvltalggilkkkghheaelkplaqshatkhkipikylefisdaiihvlhsrhpgdfgadaqaamnkalelfrkdiaakykelgfqg 153 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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36 vls+ ewqlvl++wakveadvaghgqdilirlfk+hpetlekfd+fkhlkteaemkasedlkkhg tvltalg+ilkkkghheaelkplaqshatkhkipikylefis+aiihvlhsrhpgdfgadaq amnkalelfrkdiaakykelg+qg |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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37 sp|P02185|MYG_PHYCD 2 VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG 154 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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38 79******************************************************************************************************************************************************8 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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39 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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40 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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41 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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42 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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43 1 ! 30.6 0.1 3.5e-11 3.5e-11 6 146 .. 8 146 .. 3 147 .] 0.91 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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44 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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45 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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46 == domain 1 score: 30.6 bits; conditional E-value: 3.5e-11 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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47 MYG_ESCGI 6 ewqlvlniwakveadvaghgqdilirlfkghpetlekfdkfkhlkteaemkasedlkkhgntvltalggilkkkghheaelkplaqshatkhkipikylefisdaiihvlhsrhpgdfgadaqaamnkalelfrkdiaaky 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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48 e v +w kv d g + l rl+ +p t f+ f l t + + +k hg vl a++ l + + + l++ h k + + ++++ + ++ vl + +f qaa k + +a ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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49 sp|P02024|HBB_GORGO 8 EKSAVTALWGKVNVDEVG--GEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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50 6677889******99876..57899**********************9999*****************9999999****************99999999***********8888889**********99887777777776 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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51 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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52 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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53 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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54 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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55 ------------------------------------- |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
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56 Query model(s): 1 (153 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
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57 Target sequences: 2 (301 residues searched) |
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f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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58 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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59 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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60 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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61 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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62 Initial search space (Z): 2 [actual number of targets] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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63 Domain search space (domZ): 2 [number of targets reported over threshold] |
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be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
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64 # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
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65 # Mc/sec: 2.67 |
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f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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66 // |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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67 Query: MYG_HORSE [L=153] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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68 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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69 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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70 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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71 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
72 7.1e-93 295.7 5.0 7.9e-93 295.6 5.0 1.0 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
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|
73 7.5e-12 32.7 0.1 9e-12 32.5 0.1 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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|
74 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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|
75 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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|
76 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
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|
77 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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78 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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|
79 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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|
80 1 ! 295.6 5.0 7.9e-93 7.9e-93 2 153 .] 3 154 .] 2 154 .] 0.99 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
81 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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|
82 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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83 == domain 1 score: 295.6 bits; conditional E-value: 7.9e-93 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
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|
84 MYG_HORSE 2 lsdgewqqvlnvwgkveadiaghgqevlirlftghpetlekfdkfkhlkteaemkasedlkkhgtvvltalggilkkkghheaelkplaqshatkhkipikylefisdaiihvlhskhpgnfgadaqgamtkalelfrndiaakykelgfqg 153 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
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|
85 ls+gewq vl+vw+kvead+aghgq++lirlf +hpetlekfd+fkhlkteaemkasedlkkhg vltalg+ilkkkghheaelkplaqshatkhkipikylefis+aiihvlhs+hpg+fgadaqgam kalelfr diaakykelg+qg |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
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|
86 sp|P02185|MYG_PHYCD 3 LSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG 154 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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|
87 89*****************************************************************************************************************************************************8 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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|
88 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
89 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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90 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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91 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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92 1 ! 32.5 0.1 9e-12 9e-12 7 146 .. 9 146 .. 4 147 .] 0.92 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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|
93 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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|
94 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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|
95 == domain 1 score: 32.5 bits; conditional E-value: 9e-12 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
96 MYG_HORSE 7 wqqvlnvwgkveadiaghgqevlirlftghpetlekfdkfkhlkteaemkasedlkkhgtvvltalggilkkkghheaelkplaqshatkhkipikylefisdaiihvlhskhpgnfgadaqgamtkalelfrndiaaky 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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97 v +wgkv d g e l rl+ +p t f+ f l t + + +k hg vl a++ l + + + l++ h k + + ++++ + ++ vl f q+a k + n +a ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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|
98 sp|P02024|HBB_GORGO 9 KSAVTALWGKVNVDEVG--GEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
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|
99 5668889*****99875..699************************9999*****************9999999****************99999999**********987777789***********999999999998 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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|
100 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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101 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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|
102 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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103 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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104 ------------------------------------- |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
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0
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105 Query model(s): 1 (153 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
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106 Target sequences: 2 (301 residues searched) |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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107 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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108 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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109 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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110 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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111 Initial search space (Z): 2 [actual number of targets] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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112 Domain search space (domZ): 2 [number of targets reported over threshold] |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
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0
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113 # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
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114 # Mc/sec: 2.81 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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115 // |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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116 Query: MYG_PROGU [L=153] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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117 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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118 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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119 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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120 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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121 7.4e-88 279.4 3.7 8.3e-88 279.2 3.7 1.0 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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122 1.5e-12 35.0 0.1 1.6e-12 34.9 0.1 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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|
123 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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124 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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125 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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126 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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127 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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|
128 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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129 1 ! 279.2 3.7 8.3e-88 8.3e-88 2 153 .] 3 154 .] 2 154 .] 0.99 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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parents:
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|
130 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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131 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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132 == domain 1 score: 279.2 bits; conditional E-value: 8.3e-88 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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|
133 MYG_PROGU 2 lsdgewqlvlnvwgkvegdlsghgqevlirlfkghpetlekfdkfkhlkaedemraseelkkhgttvltalggilkkkgqhaaelaplaqshatkhkipvkylefiseaiiqvlqskhpgdfgadaqgamskalelfrndiaakykelgfqg 153 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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|
134 ls+gewqlvl+vw+kve+d++ghgq++lirlfk+hpetlekfd+fkhlk e em+ase+lkkhg tvltalg+ilkkkg h ael plaqshatkhkip+kylefiseaii vl s+hpgdfgadaqgam+kalelfr diaakykelg+qg |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
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|
135 sp|P02185|MYG_PHYCD 3 LSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG 154 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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|
136 89*****************************************************************************************************************************************************8 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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|
137 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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|
138 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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139 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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140 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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141 1 ! 34.9 0.1 1.6e-12 1.6e-12 6 146 .. 8 146 .. 3 147 .] 0.92 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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142 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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|
143 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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144 == domain 1 score: 34.9 bits; conditional E-value: 1.6e-12 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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145 MYG_PROGU 6 ewqlvlnvwgkvegdlsghgqevlirlfkghpetlekfdkfkhlkaedemraseelkkhgttvltalggilkkkgqhaaelaplaqshatkhkipvkylefiseaiiqvlqskhpgdfgadaqgamskalelfrndiaaky 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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146 e v +wgkv d g e l rl+ +p t f+ f l d + + ++k hg vl a++ l +a l++ h k + + ++++ ++ vl +f q+a k + n +a ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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147 sp|P02024|HBB_GORGO 8 EKSAVTALWGKVNVDEV--GGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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148 56678889****98865..6799********************************************999999999999************99999999***********9888889*************99999999998 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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149 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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150 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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|
151 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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152 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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153 ------------------------------------- |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
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154 Query model(s): 1 (153 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
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155 Target sequences: 2 (301 residues searched) |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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156 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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157 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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158 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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159 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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160 Initial search space (Z): 2 [actual number of targets] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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161 Domain search space (domZ): 2 [number of targets reported over threshold] |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
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162 # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
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163 # Mc/sec: 2.81 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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164 // |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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165 Query: MYG_SAISC [L=153] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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166 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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167 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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168 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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169 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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170 5e-87 276.6 4.6 5.5e-87 276.5 4.6 1.0 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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171 1e-12 35.5 0.1 1.1e-12 35.3 0.1 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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172 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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173 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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174 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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175 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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176 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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|
177 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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178 1 ! 276.5 4.6 5.5e-87 5.5e-87 2 153 .] 3 154 .] 2 154 .] 0.99 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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|
179 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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180 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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181 == domain 1 score: 276.5 bits; conditional E-value: 5.5e-87 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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182 MYG_SAISC 2 lsdgewqlvlniwgkveadipshgqevlislfkghpetlekfdkfkhlksedemkaseelkkhgttvltalggilkkkgqheaelkplaqshatkhkipvkylelisdaivhvlqkkhpgdfgadaqgamkkalelfrndmaakykelgfqg 153 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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|
183 ls+gewqlvl++w+kvead+ hgq++li lfk+hpetlekfd+fkhlk+e emkase+lkkhg tvltalg+ilkkkg heaelkplaqshatkhkip+kyle+is+ai+hvl +hpgdfgadaqgam kalelfr d+aakykelg+qg |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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|
184 sp|P02185|MYG_PHYCD 3 LSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG 154 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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185 89*****************************************************************************************************************************************************8 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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186 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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187 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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188 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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189 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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190 1 ! 35.3 0.1 1.1e-12 1.1e-12 6 146 .. 8 146 .. 3 147 .] 0.93 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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191 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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192 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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193 == domain 1 score: 35.3 bits; conditional E-value: 1.1e-12 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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194 MYG_SAISC 6 ewqlvlniwgkveadipshgqevlislfkghpetlekfdkfkhlksedemkaseelkkhgttvltalggilkkkgqheaelkplaqshatkhkipvkylelisdaivhvlqkkhpgdfgadaqgamkkalelfrndmaaky 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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195 e v +wgkv d g e l l+ +p t f+ f l + d + + ++k hg vl a++ l + + l++ h k + + ++l+ + +v vl +f q+a +k + n +a ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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196 sp|P02024|HBB_GORGO 8 EKSAVTALWGKVNVD--EVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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197 5667889*****877..6799**********************************************9999999999**************99999999***********998899**************99999999998 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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198 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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199 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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|
200 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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201 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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202 ------------------------------------- |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
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203 Query model(s): 1 (153 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
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204 Target sequences: 2 (301 residues searched) |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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205 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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206 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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207 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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208 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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209 Initial search space (Z): 2 [actual number of targets] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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210 Domain search space (domZ): 2 [number of targets reported over threshold] |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
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211 # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
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212 # Mc/sec: 2.78 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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213 // |
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214 Query: MYG_LYCPI [L=153] |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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215 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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216 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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217 E-value score bias E-value score bias exp N Sequence Description |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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218 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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219 7e-86 272.9 4.1 7.8e-86 272.8 4.1 1.0 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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220 5.6e-15 42.8 0.0 6.1e-15 42.7 0.0 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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221 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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222 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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223 Domain annotation for each sequence (and alignments): |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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224 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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225 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
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226 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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227 1 ! 272.8 4.1 7.8e-86 7.8e-86 2 153 .] 3 154 .] 2 154 .] 0.99 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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228 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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229 Alignments for each domain: |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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230 == domain 1 score: 272.8 bits; conditional E-value: 7.8e-86 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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231 MYG_LYCPI 2 lsdgewqivlniwgkvetdlaghgqevlirlfknhpetldkfdkfkhlktedemkgsedlkkhgntvltalggilkkkghheaelkplaqshatkhkipvkylefisdaiiqvlqnkhsgdfhadteaamkkalelfrndiaakykelgfqg 153 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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232 ls+gewq+vl++w+kve d+aghgq++lirlfk+hpetl+kfd+fkhlkte emk+sedlkkhg tvltalg+ilkkkghheaelkplaqshatkhkip+kylefis+aii vl ++h gdf ad + am kalelfr diaakykelg+qg |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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233 sp|P02185|MYG_PHYCD 3 LSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG 154 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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234 89*****************************************************************************************************************************************************8 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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235 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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236 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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237 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
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238 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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239 1 ! 42.7 0.0 6.1e-15 6.1e-15 6 146 .. 8 146 .. 3 147 .] 0.94 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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240 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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241 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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242 == domain 1 score: 42.7 bits; conditional E-value: 6.1e-15 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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243 MYG_LYCPI 6 ewqivlniwgkvetdlaghgqevlirlfknhpetldkfdkfkhlktedemkgsedlkkhgntvltalggilkkkghheaelkplaqshatkhkipvkylefisdaiiqvlqnkhsgdfhadteaamkkalelfrndiaaky 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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244 e v +wgkv d g e l rl+ +p t f+ f l t d + g+ +k hg vl a++ l + + + l++ h k + + ++++ + ++ vl + +f +aa +k + n +a ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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245 sp|P02024|HBB_GORGO 8 EKSAVTALWGKVNVDEVG--GEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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246 5667889*******9875..699*********************************************9999999****************99999999************99999***************9999999998 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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247 |
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248 |
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249 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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250 Internal pipeline statistics summary: |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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251 ------------------------------------- |
4
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
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252 Query model(s): 1 (153 nodes) |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
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253 Target sequences: 2 (301 residues searched) |
0
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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254 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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255 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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256 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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257 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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258 Initial search space (Z): 2 [actual number of targets] |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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259 Domain search space (domZ): 2 [number of targets reported over threshold] |
4
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
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260 # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
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261 # Mc/sec: 2.74 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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262 // |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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263 Query: MYG_MOUSE [L=153] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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264 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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265 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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266 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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267 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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268 6e-85 270.1 2.6 6.7e-85 269.9 2.6 1.0 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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269 3.2e-12 34.0 0.0 3.5e-12 33.9 0.0 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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270 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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271 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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272 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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273 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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274 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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275 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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276 1 ! 269.9 2.6 6.7e-85 6.7e-85 2 153 .] 3 154 .] 2 154 .] 0.99 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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277 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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278 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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279 == domain 1 score: 269.9 bits; conditional E-value: 6.7e-85 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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280 MYG_MOUSE 2 lsdgewqlvlnvwgkveadlaghgqevliglfkthpetldkfdkfknlkseedmkgsedlkkhgctvltalgtilkkkgqhaaeiqplaqshatkhkipvkylefiseiiievlkkrhsgdfgadaqgamskalelfrndiaakykelgfqg 153 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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281 ls+gewqlvl+vw+kvead+aghgq++li lfk+hpetl+kfd+fk+lk+e +mk+sedlkkhg tvltalg ilkkkg h ae++plaqshatkhkip+kylefise ii vl rh gdfgadaqgam+kalelfr diaakykelg+qg |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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282 sp|P02185|MYG_PHYCD 3 LSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG 154 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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283 89*****************************************************************************************************************************************************8 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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284 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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285 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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286 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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287 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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288 1 ! 33.9 0.0 3.5e-12 3.5e-12 6 146 .. 8 146 .. 3 147 .] 0.93 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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289 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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290 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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291 == domain 1 score: 33.9 bits; conditional E-value: 3.5e-12 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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292 MYG_MOUSE 6 ewqlvlnvwgkveadlaghgqevliglfkthpetldkfdkfknlkseedmkgsedlkkhgctvltalgtilkkkgqhaaeiqplaqshatkhkipvkylefiseiiievlkkrhsgdfgadaqgamskalelfrndiaaky 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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293 e v +wgkv d g e l l+ +p t f+ f +l + + + g+ +k hg vl a++ l + l++ h k + + ++++ +++ vl + +f q+a k + n +a ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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294 sp|P02024|HBB_GORGO 8 EKSAVTALWGKVNVDEVG--GEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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295 56678889******9876..589999*********************************************999999999***********99999999***********999999**************99999999998 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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296 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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297 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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298 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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299 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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300 ------------------------------------- |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
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301 Query model(s): 1 (153 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
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302 Target sequences: 2 (301 residues searched) |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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303 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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304 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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305 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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306 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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307 Initial search space (Z): 2 [actual number of targets] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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308 Domain search space (domZ): 2 [number of targets reported over threshold] |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
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309 # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
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310 # Mc/sec: 2.78 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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311 // |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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312 Query: MYG_MUSAN [L=148] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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313 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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314 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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315 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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316 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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317 1e-35 110.0 0.1 1.1e-35 109.9 0.1 1.0 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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318 8.3e-09 22.9 0.0 9.1e-09 22.7 0.0 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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319 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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|
320 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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321 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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322 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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323 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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324 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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325 1 ! 109.9 0.1 1.1e-35 1.1e-35 2 148 .] 7 154 .] 6 154 .] 0.98 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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326 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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327 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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328 == domain 1 score: 109.9 bits; conditional E-value: 1.1e-35 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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329 MYG_MUSAN 2 dwekvnsvwsavesdltaigqnillrlfeqypesqnhfpkfkn.kslgelkdtadikaqadtvlsalgnivkkkgshsqpvkalaathitthkipphyftkittiavdvlsemypsemnaqvqaafsgafkiicsdiekeykaanfqg 148 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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|
330 +w+ v vw+ ve+d+ gq+il+rlf+ +pe+ f +fk+ k+ +e+k + d+k tvl+alg i+kkkg h +k la +h t hkip y+ i+ + vl +p ++ a q a++ a++++ di +yk +qg |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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|
331 sp|P02185|MYG_PHYCD 7 EWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHlKTEAEMKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG 154 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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332 7*****************************************867889************************************************************************************************9998 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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333 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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334 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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335 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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|
336 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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337 1 ! 22.7 0.0 9.1e-09 9.1e-09 6 131 .. 12 136 .. 7 147 .] 0.87 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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338 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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339 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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340 == domain 1 score: 22.7 bits; conditional E-value: 9.1e-09 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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341 MYG_MUSAN 6 vnsvwsavesdltaigqnillrlfeqypesqnhfpkfknkslge.lkdtadikaqadtvlsalgnivkkkgshsqpvkalaathitthkipphyftkittiavdvlsemypsemnaqvqaafsgafk 131 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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342 v ++w v d +g l rl+ yp +q f f + s + + +ka vl a+++ + + l+ h + p+ f + + v vl+ + e+ vqaa+ |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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|
343 sp|P02024|HBB_GORGO 12 VTALWGKVNVD--EVGGEALGRLLVVYPWTQRFFESFGDLSTPDaVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVA 136 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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|
344 77899988766..78999*********************998762678999***********999998888888888999999**9999********************************986655 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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|
345 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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346 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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|
347 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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348 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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|
349 ------------------------------------- |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
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|
350 Query model(s): 1 (148 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
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351 Target sequences: 2 (301 residues searched) |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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|
352 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
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|
353 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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|
354 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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|
355 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
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|
356 Initial search space (Z): 2 [actual number of targets] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
357 Domain search space (domZ): 2 [number of targets reported over threshold] |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
358 # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
359 # Mc/sec: 2.88 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
360 // |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
361 Query: HBA_AILME [L=141] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
362 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
363 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
364 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
365 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
366 1.4e-34 106.1 0.2 1.7e-34 105.9 0.2 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
367 5.4e-11 29.8 0.5 6.4e-11 29.6 0.5 1.1 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
368 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
369 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
370 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
371 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
372 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
373 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
374 1 ! 105.9 0.2 1.7e-34 1.7e-34 2 140 .. 4 146 .. 3 147 .] 0.94 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
375 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
376 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
377 == domain 1 score: 105.9 bits; conditional E-value: 1.7e-34 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
378 HBA_AILME 2 lspadktnvkatwdkigghageyggealertfasfpttktyfphf.dlsp.....gsaqvkahgkkvadalttavghlddlpgalsalsdlhahklrvdpvnfkllshcllvtlashhpaeftpavhasldkffsavstvltsky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
379 l+p +k+ v a w k++ e ggeal r + +p t+ +f f dls g+ +vkahgkkv a++ ++hld+l g ++ ls+lh kl+vdp nfkll + l+ la h eftp v+a+ k + v+ l ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
380 sp|P02024|HBB_GORGO 4 LTPEEKSAVTALWGKVN--VDEVGGEALGRLLVVYPWTQRFFESFgDLSTpdavmGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
381 789************95..78*********************99977774244448889***********************************************************************************999 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
382 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
383 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
384 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
385 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
386 1 ! 29.6 0.5 6.4e-11 6.4e-11 3 140 .. 4 147 .. 2 148 .. 0.77 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
387 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
388 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
389 == domain 1 score: 29.6 bits; conditional E-value: 6.4e-11 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
390 HBA_AILME 3 spadktnvkatwdkigghageyggealertfasfpttktyfphfdlspgsaqvka......hgkkvadalttavghlddlpgalsalsdlhahklrvdpvnfkllshcllvtlashhpaeftpavhasldkffsavstvltsky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
391 s + v w k+ + + +g + l r f s p t f +f a++ka hg v al + + l l+ ha k ++ ++++s++++ l s+hp +f + +++k + + +ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
392 sp|P02185|MYG_PHYCD 4 SEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKAsedlkkHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKY 147 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
393 55555667789*******999****************9999888766555555542211116666666666665555666678999******999997777799*****************99999999998887777777777 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
394 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
395 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
396 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
397 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
398 ------------------------------------- |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
399 Query model(s): 1 (141 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
400 Target sequences: 2 (301 residues searched) |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
401 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
402 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
403 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
404 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
405 Initial search space (Z): 2 [actual number of targets] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
406 Domain search space (domZ): 2 [number of targets reported over threshold] |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
407 # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
408 # Mc/sec: 2.80 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
409 // |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
410 Query: HBA_PROLO [L=141] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
411 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
412 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
413 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
414 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
415 1.9e-33 102.5 0.2 2.2e-33 102.3 0.2 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
416 6.3e-10 26.3 0.3 7.5e-10 26.0 0.3 1.1 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
417 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
418 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
419 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
420 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
421 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
422 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
423 1 ! 102.3 0.2 2.2e-33 2.2e-33 2 140 .. 4 146 .. 3 147 .] 0.94 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
424 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
425 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
426 == domain 1 score: 102.3 bits; conditional E-value: 2.2e-33 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
427 HBA_PROLO 2 lspadkanikatwdkigghageyggealertfasfpttktyfphf.dlsp.....gsaqvkahgkkvadaltlavghlddlpgalsalsdlhayklrvdpvnfkllshcllvtlachhpaeftpavhasldkfftsvstvltsky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
428 l+p +k+ + a w k++ e ggeal r + +p t+ +f f dls g+ +vkahgkkv a++ ++hld+l g ++ ls+lh kl+vdp nfkll + l+ la h eftp v+a+ k v+ l ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
429 sp|P02024|HBB_GORGO 4 LTPEEKSAVTALWGKVN--VDEVGGEALGRLLVVYPWTQRFFESFgDLSTpdavmGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
430 789************95..78*********************99977774244448889***********************************************************************************999 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
431 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
432 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
433 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
434 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
435 1 ! 26.0 0.3 7.5e-10 7.5e-10 8 140 .. 9 147 .. 2 148 .. 0.78 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
436 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
437 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
438 == domain 1 score: 26.0 bits; conditional E-value: 7.5e-10 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
439 HBA_PROLO 8 anikatwdkigghageyggealertfasfpttktyfphfdlsp......gsaqvkahgkkvadaltlavghlddlpgalsalsdlhayklrvdpvnfkllshcllvtlachhpaeftpavhasldkfftsvstvltsky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
440 + w k+ + + +g + l r f s p t f +f +s +k hg v al + + l l+ ha k ++ ++++s++++ l +hp +f + +++k + + +ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
441 sp|P02185|MYG_PHYCD 9 QLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKteaemkASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKY 147 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
442 556678*******999****************9988887654401111145556778888888888777777778889************997777899*****************99999999887766666666665 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
443 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
444 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
445 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
446 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
447 ------------------------------------- |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
448 Query model(s): 1 (141 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
449 Target sequences: 2 (301 residues searched) |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
450 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
451 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
452 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
453 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
454 Initial search space (Z): 2 [actual number of targets] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
455 Domain search space (domZ): 2 [number of targets reported over threshold] |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
456 # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
457 # Mc/sec: 2.73 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
458 // |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
459 Query: HBA_PAGLA [L=141] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
460 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
461 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
462 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
463 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
464 1e-30 93.5 0.2 1.2e-30 93.3 0.2 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
465 2.4e-10 27.7 0.5 3e-10 27.4 0.5 1.1 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
466 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
467 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
468 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
469 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
470 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
471 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
472 1 ! 93.3 0.2 1.2e-30 1.2e-30 4 140 .. 6 146 .. 3 147 .] 0.92 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
473 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
474 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
475 == domain 1 score: 93.3 bits; conditional E-value: 1.2e-30 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
476 HBA_PAGLA 4 sadknnikatwdkigshageygaealertfisfpttktyfphf.dls.....hgsaqvkahgkkvadaltlavghledlpnalsalsdlhayklrvdpvnfkllshcllvtlachhpaeftpavhsaldkffsavstvltsky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
477 +k+ + a w k++ e g eal r ++ +p t+ +f f dls g+ +vkahgkkv a++ ++hl++l ++ ls+lh kl+vdp nfkll + l+ la h eftp v++a k + v+ l ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
478 sp|P02024|HBB_GORGO 6 PEEKSAVTALWGKVN--VDEVGGEALGRLLVVYPWTQRFFESFgDLStpdavMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
479 5689999******95..78*********************99977773333358899***********************************************************************************999 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
480 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
481 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
482 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
483 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
484 1 ! 27.4 0.5 3e-10 3e-10 2 140 .. 3 147 .. 2 148 .. 0.78 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
485 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
486 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
487 == domain 1 score: 27.4 bits; conditional E-value: 3e-10 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
488 HBA_PAGLA 2 lssadknnikatwdkigshageygaealertfisfpttktyfphfdlsh......gsaqvkahgkkvadaltlavghledlpnalsalsdlhayklrvdpvnfkllshcllvtlachhpaeftpavhsaldkffsavstvltsky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
489 ls + + w k+ + + +g + l r f s p t f +f +s +k hg v al + l l+ ha k ++ ++++s++++ l +hp +f + a++k + + +ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
490 sp|P02185|MYG_PHYCD 3 LSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKteaemkASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKY 147 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
491 566666677789**************************99888886544001111455567788888888776655445555679999********997777899*******************999999999888777777777 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
492 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
493 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
494 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
495 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
496 ------------------------------------- |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
497 Query model(s): 1 (141 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
498 Target sequences: 2 (301 residues searched) |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
499 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
500 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
501 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
502 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
503 Initial search space (Z): 2 [actual number of targets] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
504 Domain search space (domZ): 2 [number of targets reported over threshold] |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
505 # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
506 # Mc/sec: 2.33 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
507 // |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
508 Query: HBA_MACFA [L=141] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
509 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
510 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
511 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
512 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
513 4e-33 101.4 0.3 4.8e-33 101.1 0.3 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
514 1.4e-09 25.2 0.9 1.7e-09 24.9 0.9 1.1 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
515 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
516 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
517 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
518 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
519 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
520 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
521 1 ! 101.1 0.3 4.8e-33 4.8e-33 2 140 .. 4 146 .. 3 147 .] 0.94 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
522 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
523 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
524 == domain 1 score: 101.1 bits; conditional E-value: 4.8e-33 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
525 HBA_MACFA 2 lspadktnvkaawgkvgghageygaealermflsfpttktyfphf.dls.....hgsaqvkghgkkvadaltlavghvddmpqalsalsdlhahklrvdpvnfkllshcllvtlaahlpaeftpavhasldkflasvstvltsky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
526 l+p +k+ v a wgkv+ e g eal r+++ +p t+ +f f dls g+ +vk+hgkkv a++ ++h+d++ ++ ls+lh kl+vdp nfkll + l+ la h+ eftp v+a+ k +a v+ l ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
527 sp|P02024|HBB_GORGO 4 LTPEEKSAVTALWGKVN--VDEVGGEALGRLLVVYPWTQRFFESFgDLStpdavMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
528 789************95..78*********************99977773333358899***********************************************************************************999 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
529 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
530 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
531 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
532 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
533 1 ! 24.9 0.9 1.7e-09 1.7e-09 3 140 .. 4 147 .. 2 148 .. 0.81 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
534 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
535 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
536 == domain 1 score: 24.9 bits; conditional E-value: 1.7e-09 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
537 HBA_MACFA 3 spadktnvkaawgkvgghageygaealermflsfpttktyfphfdls......hgsaqvkghgkkvadaltlavghvddmpqalsalsdlhahklrvdpvnfkllshcllvtlaahlpaeftpavhasldkflasvstvltsky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
538 s + v w+kv + + +g + l r+f s p t f +f +s +k hg v al + l l+ ha k ++ ++++s++++ l ++ p +f + +++k l + +ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
539 sp|P02185|MYG_PHYCD 4 SEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLkteaemKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKY 147 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
540 55555667789**************************988887754301111135667889999999999888877778888999*******999997677799******************9999999999988777777777 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
541 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
542 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
543 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
544 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
545 ------------------------------------- |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
546 Query model(s): 1 (141 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
547 Target sequences: 2 (301 residues searched) |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
548 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
549 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
550 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
551 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
552 Initial search space (Z): 2 [actual number of targets] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
553 Domain search space (domZ): 2 [number of targets reported over threshold] |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
554 # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
555 # Mc/sec: 2.65 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
556 // |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
557 Query: HBA_MACSI [L=141] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
558 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
559 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
560 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
561 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
562 2.9e-32 98.6 0.3 3.4e-32 98.4 0.3 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
563 1.1e-09 25.5 0.8 1.3e-09 25.3 0.8 1.1 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
564 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
565 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
566 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
567 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
568 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
569 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
570 1 ! 98.4 0.3 3.4e-32 3.4e-32 2 140 .. 4 146 .. 3 147 .] 0.94 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
571 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
572 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
573 == domain 1 score: 98.4 bits; conditional E-value: 3.4e-32 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
574 HBA_MACSI 2 lspadktnvkdawgkvgghageygaealermflsfpttktyfphf.dls.....hgsaqvkghgkkvadaltlavghvddmpqalsalsdlhahklrvdpvnfkllshcllvtlaahlpaeftpavhasldkflasvstvltsky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
575 l+p +k+ v wgkv+ e g eal r+++ +p t+ +f f dls g+ +vk+hgkkv a++ ++h+d++ ++ ls+lh kl+vdp nfkll + l+ la h+ eftp v+a+ k +a v+ l ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
576 sp|P02024|HBB_GORGO 4 LTPEEKSAVTALWGKVN--VDEVGGEALGRLLVVYPWTQRFFESFgDLStpdavMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
577 789************95..78*********************99977773333358899***********************************************************************************999 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
578 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
579 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
580 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
581 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
582 1 ! 25.3 0.8 1.3e-09 1.3e-09 2 140 .. 3 147 .. 2 148 .. 0.81 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
583 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
584 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
585 == domain 1 score: 25.3 bits; conditional E-value: 1.3e-09 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
586 HBA_MACSI 2 lspadktnvkdawgkvgghageygaealermflsfpttktyfphfdls......hgsaqvkghgkkvadaltlavghvddmpqalsalsdlhahklrvdpvnfkllshcllvtlaahlpaeftpavhasldkflasvstvltsky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
587 ls + v w+kv + + +g + l r+f s p t f +f +s +k hg v al + l l+ ha k ++ ++++s++++ l ++ p +f + +++k l + +ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
588 sp|P02185|MYG_PHYCD 3 LSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLkteaemKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKY 147 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
589 556666667889**************************988887754301111135667889999999999888877778888999*******999997677799******************9999999999988777777777 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
590 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
591 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
592 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
593 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
594 ------------------------------------- |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
595 Query model(s): 1 (141 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
596 Target sequences: 2 (301 residues searched) |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
597 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
598 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
599 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
600 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
601 Initial search space (Z): 2 [actual number of targets] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
602 Domain search space (domZ): 2 [number of targets reported over threshold] |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
603 # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
604 # Mc/sec: 2.73 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
605 // |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
606 Query: HBA_PONPY [L=141] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
607 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
608 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
609 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
610 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
611 1.4e-33 103.0 0.2 1.6e-33 102.8 0.2 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
612 3e-10 27.5 0.6 3.5e-10 27.3 0.6 1.1 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
613 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
614 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
615 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
616 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
617 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
618 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
619 1 ! 102.8 0.2 1.6e-33 1.6e-33 2 140 .. 4 146 .. 3 147 .] 0.93 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
620 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
621 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
622 == domain 1 score: 102.8 bits; conditional E-value: 1.6e-33 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
623 HBA_PONPY 2 lspadktnvktawgkvgahagdygaealermflsfpttktyfphf.dls.....hgsaqvkdhgkkvadaltnavahvddmpnalsalsdlhahklrvdpvnfkllshcllvtlaahlpaeftpavhasldkflasvstvltsky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
624 l+p +k+ v wgkv+ + g eal r+++ +p t+ +f f dls g+ +vk hgkkv a+++ +ah+d++ ++ ls+lh kl+vdp nfkll + l+ la h+ eftp v+a+ k +a v+ l ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
625 sp|P02024|HBB_GORGO 4 LTPEEKSAVTALWGKVN--VDEVGGEALGRLLVVYPWTQRFFESFgDLStpdavMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
626 789************97..5799*******************99977773333358899***********************************************************************************999 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
627 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
628 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
629 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
630 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
631 1 ! 27.3 0.6 3.5e-10 3.5e-10 3 140 .. 4 147 .. 2 148 .. 0.82 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
632 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
633 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
634 == domain 1 score: 27.3 bits; conditional E-value: 3.5e-10 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
635 HBA_PONPY 3 spadktnvktawgkvgahagdygaealermflsfpttktyfphfdls......hgsaqvkdhgkkvadaltnavahvddmpnalsalsdlhahklrvdpvnfkllshcllvtlaahlpaeftpavhasldkflasvstvltsky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
636 s + v w+kv a + +g + l r+f s p t f +f +s +k hg v al + l l+ ha k ++ ++++s++++ l ++ p +f + +++k l + +ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
637 sp|P02185|MYG_PHYCD 4 SEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLkteaemKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKY 147 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
638 55556667789**************************988877753301111145667899******9998888888888889*********999997777799******************9999999999988777777777 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
639 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
640 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
641 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
642 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
643 ------------------------------------- |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
644 Query model(s): 1 (141 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
645 Target sequences: 2 (301 residues searched) |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
646 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
647 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
648 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
649 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
650 Initial search space (Z): 2 [actual number of targets] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
651 Domain search space (domZ): 2 [number of targets reported over threshold] |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
652 # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
653 # Mc/sec: 2.67 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
654 // |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
655 Query: HBA2_GALCR [L=141] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
656 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
657 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
658 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
659 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
660 1.4e-32 99.7 0.2 1.7e-32 99.4 0.2 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
661 9.9e-11 28.9 0.7 1.2e-10 28.7 0.7 1.1 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
662 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
663 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
664 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
665 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
666 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
667 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
668 1 ! 99.4 0.2 1.7e-32 1.7e-32 2 140 .. 4 146 .. 3 147 .] 0.93 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
669 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
670 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
671 == domain 1 score: 99.4 bits; conditional E-value: 1.7e-32 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
672 HBA2_GALCR 2 lsptdksnvkaawekvgahagdygaealermflsfpttktyfphf.dls.....hgstqvkghgkkvadaltnavlhvddmpsalsalsdlhahklrvdpvnfkllrhcllvtlachhpaeftpavhasldkfmasvstvltsky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
673 l+p +ks v a w kv+ + g eal r+++ +p t+ +f f dls g+ +vk+hgkkv a+++ + h+d++ ++ ls+lh kl+vdp nfkll + l+ la h eftp v+a+ k +a v+ l ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
674 sp|P02024|HBB_GORGO 4 LTPEEKSAVTALWGKVN--VDEVGGEALGRLLVVYPWTQRFFESFgDLStpdavMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
675 789************97..5799*******************9997676333336999************************************************************************************999 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
676 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
677 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
678 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
679 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
680 1 ! 28.7 0.7 1.2e-10 1.2e-10 8 140 .. 9 147 .. 2 148 .. 0.80 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
681 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
682 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
683 == domain 1 score: 28.7 bits; conditional E-value: 1.2e-10 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
684 HBA2_GALCR 8 snvkaawekvgahagdygaealermflsfpttktyfphfd...l...shgstqvkghgkkvadaltnavlhvddmpsalsalsdlhahklrvdpvnfkllrhcllvtlachhpaeftpavhasldkfmasvstvltsky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
685 v w kv a + +g + l r+f s p t f +f +s +k hg v al + + l l+ ha k ++ ++++ ++++ l +hp +f + +++k + + +ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
686 sp|P02185|MYG_PHYCD 9 QLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKhlkTeaeMKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKY 147 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
687 556779*************************9988777642112111346788999*******997655566777889*********9999976677899****************99999999998877766666666 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
688 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
689 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
690 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
691 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
692 ------------------------------------- |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
693 Query model(s): 1 (141 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
694 Target sequences: 2 (301 residues searched) |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
695 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
696 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
697 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
698 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
699 Initial search space (Z): 2 [actual number of targets] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
700 Domain search space (domZ): 2 [number of targets reported over threshold] |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
701 # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
702 # Mc/sec: 2.68 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
703 // |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
704 Query: HBA_MESAU [L=141] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
705 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
706 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
707 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
708 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
709 6.9e-35 107.0 0.4 8.1e-35 106.7 0.4 1.1 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
710 1.2e-10 28.4 0.6 1.4e-10 28.2 0.6 1.1 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
711 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
712 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
713 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
714 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
715 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
716 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
717 1 ! 106.7 0.4 8.1e-35 8.1e-35 3 140 .. 5 146 .. 3 147 .] 0.93 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
718 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
719 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
720 == domain 1 score: 106.7 bits; conditional E-value: 8.1e-35 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
721 HBA_MESAU 3 sakdktniseawgkigghageygaealermffvypttktyfphf......dvshgsaqvkghgkkvadaltnavghlddlpgalsalsdlhahklrvdpvnfkllshcllvtlanhhpadftpavhasldkffasvstvltsky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
722 + ++k+ ++ wgk++ e g eal r++ vyp t+ +f f d g+ +vk+hgkkv a+++ ++hld+l g ++ ls+lh kl+vdp nfkll + l+ la+h +ftp v+a+ k a v+ l ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
723 sp|P02024|HBB_GORGO 5 TPEEKSAVTALWGKVN--VDEVGGEALGRLLVVYPWTQRFFESFgdlstpDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
724 6789999*******95..78*********************9997444444557999************************************************************************************999 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
725 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
726 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
727 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
728 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
729 1 ! 28.2 0.6 1.4e-10 1.4e-10 9 140 .. 10 147 .. 2 148 .. 0.78 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
730 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
731 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
732 == domain 1 score: 28.2 bits; conditional E-value: 1.4e-10 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
733 HBA_MESAU 9 niseawgkigghageygaealermffvypttktyfphfdvs......hgsaqvkghgkkvadaltnavghlddlpgalsalsdlhahklrvdpvnfkllshcllvtlanhhpadftpavhasldkffasvstvltsky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
734 + w+k+ + + +g + l r+f +p t f +f +s +k hg v al + + l l+ ha k ++ ++++s++++ l ++hp df + +++k + + +ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
735 sp|P02185|MYG_PHYCD 10 LVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLkteaemKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKY 147 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
736 56789*************************998877775430001114566778899999988877777777778899********999997777799*****************99999999887766666666665 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
737 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
738 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
739 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
740 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
741 ------------------------------------- |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
742 Query model(s): 1 (141 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
743 Target sequences: 2 (301 residues searched) |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
744 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
745 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
746 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
747 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
748 Initial search space (Z): 2 [actual number of targets] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
749 Domain search space (domZ): 2 [number of targets reported over threshold] |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
750 # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
751 # Mc/sec: 2.41 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
752 // |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
753 Query: HBA2_BOSMU [L=141] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
754 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
755 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
756 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
757 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
758 6.5e-33 100.8 0.3 7.6e-33 100.6 0.3 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
759 2.1e-11 31.2 1.0 2.6e-11 30.9 1.0 1.1 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
760 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
761 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
762 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
763 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
764 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
765 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
766 1 ! 100.6 0.3 7.6e-33 7.6e-33 4 140 .. 6 146 .. 3 147 .] 0.92 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
767 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
768 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
769 == domain 1 score: 100.6 bits; conditional E-value: 7.6e-33 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
770 HBA2_BOSMU 4 aadkgnvkaawgkvgghaaeygaealermflsfpttktyfphf.dls.....hgsaqvkghgakvaaaltkavghlddlpgalselsdlhahklrvdpvnfkllshsllvtlashlpsdftpavhasldkflanvstvltsky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
771 +k+ v a wgkv+ e g eal r+++ +p t+ +f f dls g+ +vk+hg kv a++ ++hld+l g ++ ls+lh kl+vdp nfkll + l+ la h+ +ftp v+a+ k +a v+ l ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
772 sp|P02024|HBB_GORGO 6 PEEKSAVTALWGKVN--VDEVGGEALGRLLVVYPWTQRFFESFgDLStpdavMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
773 678999********6..789********************99977773333358899***********************************************************************************999 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
774 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
775 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
776 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
777 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
778 1 ! 30.9 1.0 2.6e-11 2.6e-11 8 140 .. 9 147 .. 2 148 .. 0.79 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
779 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
780 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
781 == domain 1 score: 30.9 bits; conditional E-value: 2.6e-11 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
782 HBA2_BOSMU 8 gnvkaawgkvgghaaeygaealermflsfpttktyfphfdls......hgsaqvkghgakvaaaltkavghlddlpgalselsdlhahklrvdpvnfkllshsllvtlashlpsdftpavhasldkflanvstvltsky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
783 v w+kv + a +g + l r+f s p t f +f +s +k hg v al + + l l+ ha k ++ ++++s++++ l s+ p df + +++k l + +ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
784 sp|P02185|MYG_PHYCD 9 QLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLkteaemKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKY 147 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
785 556779**************************988877754301111145667899***9998877666666666789999******999997667799******************9999999999887777777766 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
786 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
787 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
788 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
789 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
790 ------------------------------------- |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
791 Query model(s): 1 (141 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
792 Target sequences: 2 (301 residues searched) |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
793 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
794 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
795 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
796 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
797 Initial search space (Z): 2 [actual number of targets] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
798 Domain search space (domZ): 2 [number of targets reported over threshold] |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
799 # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
800 # Mc/sec: 2.64 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
801 // |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
802 Query: HBA_ERIEU [L=141] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
803 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
804 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
805 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
806 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
807 1.1e-31 97.0 0.4 1.3e-31 96.8 0.4 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
808 5.4e-12 33.2 0.3 6.4e-12 32.9 0.3 1.1 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
809 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
810 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
811 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
812 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
813 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
814 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
815 1 ! 96.8 0.4 1.3e-31 1.3e-31 4 140 .. 6 146 .. 3 147 .] 0.92 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
816 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
817 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
818 == domain 1 score: 96.8 bits; conditional E-value: 1.3e-31 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
819 HBA_ERIEU 4 atdkanvktfwgklgghggeyggealdrmfqahpttktyfphf.dln.p....gsaqvkghgkkvadalttavnnlddvpgalsalsdlhahklrvdpvnfkllshcllvtlalhhpadftpavhasldkflatvatvltsky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
820 +k+ v +wgk++ e ggeal r++ +p t+ +f f dl+ p g+ +vk+hgkkv a++ + +ld++ g ++ ls+lh kl+vdp nfkll + l+ la h +ftp v+a+ k +a va l ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
821 sp|P02024|HBB_GORGO 6 PEEKSAVTALWGKVN--VDEVGGEALGRLLVVYPWTQRFFESFgDLStPdavmGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
822 56899999*****96..57*********************99976653233448899***********************************************************************************999 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
823 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
824 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
825 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
826 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
827 1 ! 32.9 0.3 6.4e-12 6.4e-12 10 140 .. 11 147 .. 2 148 .. 0.83 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
828 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
829 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
830 == domain 1 score: 32.9 bits; conditional E-value: 6.4e-12 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
831 HBA_ERIEU 10 vktfwgklgghggeyggealdrmfqahpttktyfphfdln......pgsaqvkghgkkvadalttavnnlddvpgalsalsdlhahklrvdpvnfkllshcllvtlalhhpadftpavhasldkflatvatvltsky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
832 v w+k+ + + +g + l r+f++hp t f +f +s +k hg v al + + l l+ ha k ++ ++++s++++ l +hp df + +++k l + +ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
833 sp|P02185|MYG_PHYCD 11 VLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLkteaemKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKY 147 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
834 566899999999999**************9988877753301111235667899***********9***99**************999997777799*******************999999999998888888887 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
835 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
836 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
837 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
838 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
839 ------------------------------------- |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
840 Query model(s): 1 (141 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
841 Target sequences: 2 (301 residues searched) |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
842 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
843 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
844 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
845 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
846 Initial search space (Z): 2 [actual number of targets] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
847 Domain search space (domZ): 2 [number of targets reported over threshold] |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
848 # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
849 # Mc/sec: 2.76 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
850 // |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
851 Query: HBA_FRAPO [L=141] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
852 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
853 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
854 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
855 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
856 3e-32 98.8 0.2 3.5e-32 98.6 0.2 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
857 6.8e-09 23.2 0.6 8.3e-09 22.9 0.6 1.1 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
858 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
859 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
860 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
861 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
862 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
863 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
864 1 ! 98.6 0.2 3.5e-32 3.5e-32 4 140 .. 6 146 .. 3 147 .] 0.92 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
865 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
866 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
867 == domain 1 score: 98.6 bits; conditional E-value: 3.5e-32 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
868 HBA_FRAPO 4 aadknnvkgifgkisshaedygaealermfitypstktyfphf.dls.....hgsaqvkghgkkvvaalieaanhiddiagtlsklsdlhahklrvdpvnfkllgqcflvvvaihhpsaltpevhasldkflcavgnvltaky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
869 +k+ v +++gk++ ++ g eal r+++ yp t+ +f f dls g+ +vk+hgkkv+ a+ + h+d++ gt++ ls+lh kl+vdp nfkllg ++ v+a h +tp v+a+ k ++ v+n l ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
870 sp|P02024|HBB_GORGO 6 PEEKSAVTALWGKVN--VDEVGGEALGRLLVVYPWTQRFFESFgDLStpdavMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
871 66899999*****96..789********************99977773333358899**************************************************9999999999***********************999 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
872 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
873 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
874 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
875 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
876 1 ! 22.9 0.6 8.3e-09 8.3e-09 2 141 .] 3 148 .. 2 148 .. 0.83 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
877 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
878 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
879 == domain 1 score: 22.9 bits; conditional E-value: 8.3e-09 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
880 HBA_FRAPO 2 lsaadknnvkgifgkisshaedygaealermfitypstktyfphfdls......hgsaqvkghgkkvvaalieaanhiddiagtlsklsdlhahklrvdpvnfkllgqcflvvvaihhpsaltpevhasldkflcavgnvltakyr 141 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
881 ls + v +++k+ + +g + l r+f ++p t f +f +s +k hg v+ al + l l+ ha k ++ +++++++++ v+ +hp + + + +++k l + aky+ |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
882 sp|P02185|MYG_PHYCD 3 LSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLkteaemKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYK 148 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
883 56666667788999************************998887754301111145667889***99999887777777788999********999997667799***************************99999888889885 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
884 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
885 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
886 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
887 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
888 ------------------------------------- |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
889 Query model(s): 1 (141 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
890 Target sequences: 2 (301 residues searched) |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
891 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
892 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
893 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
894 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
895 Initial search space (Z): 2 [actual number of targets] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
896 Domain search space (domZ): 2 [number of targets reported over threshold] |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
897 # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
898 # Mc/sec: 2.70 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
899 // |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
900 Query: HBA_PHACO [L=141] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
901 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
902 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
903 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
904 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
905 8.6e-31 94.0 0.2 9.8e-31 93.8 0.2 1.1 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
906 9.6e-09 22.6 0.6 1.1e-08 22.4 0.6 1.1 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
907 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
908 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
909 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
910 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
911 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
912 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
913 1 ! 93.8 0.2 9.8e-31 9.8e-31 6 140 .. 8 146 .. 3 147 .] 0.90 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
914 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
915 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
916 == domain 1 score: 93.8 bits; conditional E-value: 9.8e-31 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
917 HBA_PHACO 6 dknnvkgiftkiaghaeeygaealermfitypstktyfphf.dls.....hgsaqikghgkkvvaalieavnhidditgtlsklsdlhahklrvdpvnfkllgqcflvvvaihhpsaltpevhasldkflcavgtvltaky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
918 +k+ v +++ k+ + +e g eal r+++ yp t+ +f f dls g+ ++k+hgkkv+ a+ + + h+d++ gt++ ls+lh kl+vdp nfkllg ++ v+a h +tp v+a+ k ++ v+ l ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
919 sp|P02024|HBB_GORGO 8 EKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFgDLStpdavMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
920 666677777776..689*********************99977773333358899**************************************************9999999999**********************9999 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
921 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
922 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
923 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
924 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
925 1 ! 22.4 0.6 1.1e-08 1.1e-08 3 141 .] 4 148 .. 2 148 .. 0.83 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
926 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
927 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
928 == domain 1 score: 22.4 bits; conditional E-value: 1.1e-08 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
929 HBA_PHACO 3 saadknnvkgiftkiaghaeeygaealermfitypstktyfphfdls......hgsaqikghgkkvvaalieavnhidditgtlsklsdlhahklrvdpvnfkllgqcflvvvaihhpsaltpevhasldkflcavgtvltakyr 141 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
930 s + v ++ k+ + +g + l r+f ++p t f +f +s +k hg v+ al + + l l+ ha k ++ +++++++++ v+ +hp + + + +++k l + aky+ |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
931 sp|P02185|MYG_PHYCD 4 SEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLkteaemKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYK 148 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
932 5566666778899999999999***************998877753301111245677899******999999999999999**********999997677799***************************99888888888885 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
933 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
934 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
935 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
936 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
937 ------------------------------------- |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
938 Query model(s): 1 (141 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
939 Target sequences: 2 (301 residues searched) |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
940 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
941 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
942 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
943 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
944 Initial search space (Z): 2 [actual number of targets] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
945 Domain search space (domZ): 2 [number of targets reported over threshold] |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
946 # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
947 # Mc/sec: 2.56 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
948 // |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
949 Query: HBA_TRIOC [L=141] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
950 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
951 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
952 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
953 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
954 4.4e-31 95.0 0.2 5.2e-31 94.7 0.2 1.1 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
955 4.8e-09 23.6 0.4 6e-09 23.3 0.4 1.1 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
956 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
957 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
958 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
959 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
960 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
961 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
962 1 ! 94.7 0.2 5.2e-31 5.2e-31 6 140 .. 8 146 .. 3 147 .] 0.89 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
963 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
964 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
965 == domain 1 score: 94.7 bits; conditional E-value: 5.2e-31 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
966 HBA_TRIOC 6 dktnvktvftkitghaedygaetlermfitypptktyfphf......dlhhgsaqikahgkkvvgalieavnhiddiagalsklsdlhaqklrvdpvnfkllgqcflvvvaihhpsvltpevhasldkflcavgnvlsaky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
967 +k+ v ++ k+ + ++ g e l r+++ yp t+ +f f d g+ ++kahgkkv+ga+ + + h+d++ g ++ ls+lh kl+vdp nfkllg ++ v+a h +tp v+a+ k ++ v+n l+ ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
968 sp|P02024|HBB_GORGO 8 EKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFgdlstpDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
969 566666666666..5789********************9997333334457999***************************************************9999999999***********************999 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
970 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
971 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
972 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
973 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
974 1 ! 23.3 0.4 6e-09 6e-09 4 141 .] 5 148 .. 2 148 .. 0.81 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
975 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
976 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
977 == domain 1 score: 23.3 bits; conditional E-value: 6e-09 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
978 HBA_TRIOC 4 andktnvktvftkitghaedygaetlermfitypptktyfphfdlh......hgsaqikahgkkvvgalieavnhiddiagalsklsdlhaqklrvdpvnfkllgqcflvvvaihhpsvltpevhasldkflcavgnvlsakyr 141 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
979 + v v+ k+ + +g + l r+f ++p t f +f +s +k hg v+ al + + l l+ ha k ++ +++++++++ v+ +hp + + + +++k l ++aky+ |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
980 sp|P02185|MYG_PHYCD 5 EGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLkteaemKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYK 148 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
981 5555667789999999999*****************99888775431111123566788899999877766666666677899************97777899***************************99999999999985 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
982 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
983 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
984 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
985 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
986 ------------------------------------- |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
987 Query model(s): 1 (141 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
988 Target sequences: 2 (301 residues searched) |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
989 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
990 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
991 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
992 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
993 Initial search space (Z): 2 [actual number of targets] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
994 Domain search space (domZ): 2 [number of targets reported over threshold] |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
995 # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
996 # Mc/sec: 2.35 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
997 // |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
998 Query: HBA_ANSSE [L=141] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
999 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1000 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1001 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1002 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1003 1.5e-29 90.0 0.2 1.7e-29 89.8 0.2 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1004 2.2e-10 28.0 0.6 2.7e-10 27.7 0.6 1.1 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1005 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1006 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1007 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1008 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1009 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1010 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1011 1 ! 89.8 0.2 1.7e-29 1.7e-29 4 140 .. 6 146 .. 3 147 .] 0.91 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1012 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1013 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1014 == domain 1 score: 89.8 bits; conditional E-value: 1.7e-29 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1015 HBA_ANSSE 4 aadkgnvktvfgkigghaeeygaetlqrmfqtfpqtktyfphf.dlq.p....gsaqikahgkkvaaalveaanhiddiagalsklsdlhaqklrvdpvnfkflghcflvvlaihhpslltpevhasmdkflcavatvltaky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1016 +k+ v ++gk+ + +e g e l r++ +p t+ +f f dl p g+ ++kahgkkv a+ + h+d++ g ++ ls+lh kl+vdp nfk+lg+ ++ vla h +tp v+a+ k ++ va l ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1017 sp|P02024|HBB_GORGO 6 PEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFgDLStPdavmGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1018 56788899999**9..589*********************99975542233338999**********************************************************************************9999 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1019 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1020 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1021 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1022 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1023 1 ! 27.7 0.6 2.7e-10 2.7e-10 9 141 .] 10 148 .. 2 148 .. 0.82 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1024 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1025 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1026 == domain 1 score: 27.7 bits; conditional E-value: 2.7e-10 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1027 HBA_ANSSE 9 nvktvfgkigghaeeygaetlqrmfqtfpqtktyfphfdl...q...pgsaqikahgkkvaaalveaanhiddiagalsklsdlhaqklrvdpvnfkflghcflvvlaihhpslltpevhasmdkflcavatvltakyr 141 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1028 v v++k+ + +g + l r+f++ p+t f +f + +s +k hg v al + l l+ ha k ++ ++f++++++ vl +hp + + + +m+k l + aky+ |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1029 sp|P02185|MYG_PHYCD 10 LVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHlktEaemKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYK 148 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1030 566789999999999****************9888777531112111456678889999999988888888888899*************9777789*****************************9999999999985 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1031 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1032 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1033 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1034 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1035 ------------------------------------- |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1036 Query model(s): 1 (141 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1037 Target sequences: 2 (301 residues searched) |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1038 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1039 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1040 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1041 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1042 Initial search space (Z): 2 [actual number of targets] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1043 Domain search space (domZ): 2 [number of targets reported over threshold] |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1044 # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1045 # Mc/sec: 2.52 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1046 // |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1047 Query: HBA_COLLI [L=141] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1048 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1049 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1050 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1051 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1052 2.7e-32 98.9 0.2 3.2e-32 98.7 0.2 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1053 5.1e-07 17.1 0.5 6.2e-07 16.8 0.5 1.2 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1054 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1055 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1056 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1057 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1058 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1059 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1060 1 ! 98.7 0.2 3.2e-32 3.2e-32 3 140 .. 5 146 .. 3 147 .] 0.92 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1061 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1062 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1063 == domain 1 score: 98.7 bits; conditional E-value: 3.2e-32 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1064 HBA_COLLI 3 sandksnvkavfakiggqagdlggealerlfitypqtktyfphf.dls.....hgsaqikghgkkvaealveaanhiddiagalsklsdlhaqklrvdpvnfkllghcflvvvavhfpslltpevhasldkfvlavgtvltaky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1065 + +ks v a++ k++ ++ggeal rl++ yp t+ +f f dls g+ ++k+hgkkv a+ + h+d++ g ++ ls+lh kl+vdp nfkllg+ ++ v+a hf +tp v+a+ k v v+ l ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1066 sp|P02024|HBB_GORGO 5 TPEEKSAVTALWGKVN--VDEVGGEALGRLLVVYPWTQRFFESFgDLStpdavMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1067 56799999*****996..679********************99977773333358899**********************************************************************************9999 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1068 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1069 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1070 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1071 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1072 1 ! 16.8 0.5 6.2e-07 6.2e-07 2 140 .. 3 147 .. 2 148 .. 0.77 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1073 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1074 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1075 == domain 1 score: 16.8 bits; conditional E-value: 6.2e-07 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1076 HBA_COLLI 2 lsandksnvkavfakiggqagdlggealerlfitypqtktyfphfdls......hgsaqikghgkkvaealveaanhiddiagalsklsdlhaqklrvdpvnfkllghcflvvvavhfpslltpevhasldkfvlavgtvltaky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1077 ls + v v+ak+ + + g + l rlf ++p+t f +f +s +k hg v al + l l+ ha k ++ +++++++++ v+ + p + + + +++k + + aky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1078 sp|P02185|MYG_PHYCD 3 LSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLkteaemKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKY 147 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1079 566666778889*****999999***************9988877543011111456678999*9999999888888888889999*********99966667889999888888888888888888888777666666666666 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1080 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1081 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1082 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1083 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1084 ------------------------------------- |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1085 Query model(s): 1 (141 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1086 Target sequences: 2 (301 residues searched) |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1087 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1088 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1089 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1090 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1091 Initial search space (Z): 2 [actual number of targets] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1092 Domain search space (domZ): 2 [number of targets reported over threshold] |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1093 # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1094 # Mc/sec: 2.79 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1095 // |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1096 Query: HBAD_CHLME [L=141] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1097 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1098 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1099 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1100 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1101 6e-33 101.1 0.0 7.2e-33 100.8 0.0 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1102 2e-11 31.4 0.4 2.6e-11 31.1 0.4 1.1 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1103 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1104 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1105 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1106 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1107 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1108 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1109 1 ! 100.8 0.0 7.2e-33 7.2e-33 2 140 .. 4 146 .. 3 147 .] 0.93 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1110 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1111 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1112 == domain 1 score: 100.8 bits; conditional E-value: 7.2e-33 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1113 HBAD_CHLME 2 ltaddkklltqlwekvaghqeefgsealqrmfltypqtktyfphf......dlhpgseqvrghgkkvaaalgnavksldnlsqalselsnlhaynlrvdpanfkllaqcfqvvlathlgkdyspemhaafdkflsavaavlaeky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1114 lt ++k +t lw kv + +e g eal r+++ yp t+ +f f d g+ +v++hgkkv a+++ + ldnl ++ ls lh l+vdp nfkll + vla h+gk+++p ++aa+ k ++ va la ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1115 sp|P02024|HBB_GORGO 4 LTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFgdlstpDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1116 7999***********9..5799********************9997333333346999**************************************************************************************9 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1117 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1118 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1119 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1120 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1121 1 ! 31.1 0.4 2.6e-11 2.6e-11 5 141 .] 6 148 .. 2 148 .. 0.85 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1122 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1123 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1124 == domain 1 score: 31.1 bits; conditional E-value: 2.6e-11 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1125 HBAD_CHLME 5 ddkklltqlwekvaghqeefgsealqrmfltypqtktyfphfd...lh...pgseqvrghgkkvaaalgnavksldnlsqalselsnlhaynlrvdpanfkllaqcfqvvlathlgkdyspemhaafdkflsavaavlaekyr 141 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1126 + +l+ +w kv + g + l r+f ++p+t f +f + +se ++ hg v alg +k + l l+ ha ++ ++++++++ vl ++ d+ + + a++k l +a ky+ |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1127 sp|P02185|MYG_PHYCD 6 GEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKhlkTEaemKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYK 148 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1128 56678999***************************988776642113222257999**************************************99999999*9998877776666699**********99999998888885 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1129 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1130 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1131 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1132 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1133 ------------------------------------- |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1134 Query model(s): 1 (141 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1135 Target sequences: 2 (301 residues searched) |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1136 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1137 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1138 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1139 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1140 Initial search space (Z): 2 [actual number of targets] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1141 Domain search space (domZ): 2 [number of targets reported over threshold] |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1142 # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1143 # Mc/sec: 1.87 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1144 // |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1145 Query: HBAD_PASMO [L=141] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1146 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1147 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1148 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1149 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1150 3.4e-32 98.5 0.0 4.1e-32 98.3 0.0 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1151 4.5e-12 33.4 0.1 5.1e-12 33.2 0.1 1.1 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1152 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1153 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1154 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1155 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1156 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1157 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1158 1 ! 98.3 0.0 4.1e-32 4.1e-32 2 140 .. 4 146 .. 3 147 .] 0.94 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1159 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1160 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1161 == domain 1 score: 98.3 bits; conditional E-value: 4.1e-32 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1162 HBAD_PASMO 2 ltaedkkliqqiwgklggaeeeigadalwrmfhsypstktyfphf.dls.....qgsdqirghgkkvvaalsnaiknldnlsqalselsnlhaynlrvdpvnfkflsqclqvslatrlgkeyspevhsavdkfmsavasvlaeky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1163 lt e+k + +wgk++ +e+g +al r++ yp t+ +f f dls g+ ++++hgkkv+ a+s+ + +ldnl ++ ls lh l+vdp nfk+l l la ++gke++p v++a k ++ va+ la ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1164 sp|P02024|HBB_GORGO 4 LTPEEKSAVTALWGKVN--VDEVGGEALGRLLVVYPWTQRFFESFgDLStpdavMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1165 899************97..579********************9997666333336999**************************************************************************************9 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1166 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1167 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1168 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1169 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1170 1 ! 33.2 0.1 5.1e-12 5.1e-12 6 141 .] 7 148 .. 1 148 [. 0.87 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1171 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1172 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1173 == domain 1 score: 33.2 bits; conditional E-value: 5.1e-12 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1174 HBAD_PASMO 6 dkkliqqiwgklggaeeeigadalwrmfhsypstktyfphfd...l...sqgsdqirghgkkvvaalsnaiknldnlsqalselsnlhaynlrvdpvnfkflsqclqvslatrlgkeyspevhsavdkfmsavasvlaekyr 141 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1175 + +l+ +w+k+ + g d l r+f s+p t f +f ++s+ ++ hg v+ al +k + l l+ ha ++ ++f+s+++ l +r ++ + + a++k + +a ky+ |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1176 sp|P02185|MYG_PHYCD 7 EWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKhlkTeaeMKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYK 148 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1177 568999******999999****************988776642112222368999************************************999777789******999********************9999999999985 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1178 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1179 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1180 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1181 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1182 ------------------------------------- |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1183 Query model(s): 1 (141 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1184 Target sequences: 2 (301 residues searched) |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1185 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1186 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1187 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1188 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1189 Initial search space (Z): 2 [actual number of targets] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1190 Domain search space (domZ): 2 [number of targets reported over threshold] |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1191 # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1192 # Mc/sec: 2.10 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1193 // |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1194 Query: HBAZ_HORSE [L=141] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1195 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1196 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1197 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1198 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1199 3.3e-31 95.4 0.0 3.9e-31 95.2 0.0 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1200 1.5e-18 54.5 0.2 1.8e-18 54.3 0.2 1.1 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1201 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1202 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1203 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1204 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1205 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1206 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1207 1 ! 95.2 0.0 3.9e-31 3.9e-31 2 140 .. 4 146 .. 3 147 .] 0.94 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1208 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1209 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1210 == domain 1 score: 95.2 bits; conditional E-value: 3.9e-31 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1211 HBAZ_HORSE 2 ltkaertmvvsiwgkismqadavgtealqrlfssypqtktyfphf......dlhegspqlrahgskvaaavgdavksidnvagalaklselhayilrvdpvnfkflshcllvtlasrlpadftadahaawdkflsivssvlteky 140 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1212 lt e++ v ++wgk++ d vg eal rl+ yp t+ +f f d g+p+++ahg kv a +d + +dn+ g +a lselh l+vdp nfk+l + l+ la ++ +ft +aa+ k ++ v++ l ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1213 sp|P02024|HBB_GORGO 4 LTPEEKSAVTALWGKVN--VDEVGGEALGRLLVVYPWTQRFFESFgdlstpDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1214 7899***********97..599********************99973333344579**************************************************************************************999 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1215 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1216 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1217 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1218 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1219 1 ! 54.3 0.2 1.8e-18 1.8e-18 2 141 .] 3 148 .. 2 148 .. 0.88 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1220 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1221 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1222 == domain 1 score: 54.3 bits; conditional E-value: 1.8e-18 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1223 HBAZ_HORSE 2 ltkaertmvvsiwgkismqadavgtealqrlfssypqtktyfphfd...lh...egspqlrahgskvaaavgdavksidnvagalaklselhayilrvdpvnfkflshcllvtlasrlpadftadahaawdkflsivssvltekyr 141 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1224 l++ e +v+ +w+k+ g + l rlf s+p+t f +f + ++s l+ hg v a+g +k + + l l++ ha ++ ++f+s++++ l sr p df ada+ a +k l + + ky+ |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1225 sp|P02185|MYG_PHYCD 3 LSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKhlkTEaemKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYK 148 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1226 56788899********9999999***************9888776421122222578999*********************************99999777789*******************************99988888885 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1227 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1228 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1229 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1230 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1231 ------------------------------------- |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1232 Query model(s): 1 (141 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1233 Target sequences: 2 (301 residues searched) |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1234 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1235 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1236 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1237 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1238 Initial search space (Z): 2 [actual number of targets] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1239 Domain search space (domZ): 2 [number of targets reported over threshold] |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1240 # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1241 # Mc/sec: 2.21 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1242 // |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1243 Query: HBA4_SALIR [L=142] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1244 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1245 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1246 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1247 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1248 2.7e-34 105.3 0.0 3e-34 105.1 0.0 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1249 8.3e-11 29.2 0.2 9.8e-11 29.0 0.2 1.0 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1250 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1251 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1252 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1253 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1254 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1255 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1256 1 ! 105.1 0.0 3e-34 3e-34 2 141 .. 4 146 .. 3 147 .] 0.93 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1257 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1258 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1259 == domain 1 score: 105.1 bits; conditional E-value: 3e-34 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1260 HBA4_SALIR 2 lsakdkanvkaiwgkilpksdeigeqalsrmlvvypqtkayfshwasva.p....gsapvkkhgitimnqiddcvghmddlfgfltklselhatklrvdptnfkilahnlivviaayfpaeftpeihlsvdkflqqlalalaeky 141 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1261 l+ ++k+ v a+wgk+ de+g +al r+lvvyp t+ +f + ++ p g+ vk hg ++ + d ++h+d+l g + lselh kl+vdp nfk+l + l+ v+a +f eftp ++ + k + +a ala ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1262 sp|P02024|HBB_GORGO 4 LTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLStPdavmGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1263 567899*********9..57**********************99987642233337889*************************************************************************************9 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1264 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1265 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1266 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1267 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1268 1 ! 29.0 0.2 9.8e-11 9.8e-11 10 142 .] 11 148 .. 3 148 .. 0.86 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1269 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1270 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1271 == domain 1 score: 29.0 bits; conditional E-value: 9.8e-11 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1272 HBA4_SALIR 10 vkaiwgkilpksdeigeqalsrmlvvypqtkay...fshwasva..pgsapvkkhgitimnqiddcvghmddlfgfltklselhatklrvdptnfkilahnlivviaayfpaeftpeihlsvdkflqqlalalaekyr 142 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1273 v +w+k+ g+ l r++ +p+t f h + a +s +kkhg+t++ + + + l l++ hatk ++ ++++++ +i v+ + p +f + + +++k l+ + +a ky+ |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1274 sp|P02185|MYG_PHYCD 11 VLHVWAKVEADVAGHGQDILIRLFKSHPETLEKfdrFKHLKTEAemKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYK 148 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1275 55689999988888999*************876122456666552246789***********99999888888899**************99999*******************************999999999986 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1276 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1277 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1278 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1279 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1280 ------------------------------------- |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1281 Query model(s): 1 (142 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1282 Target sequences: 2 (301 residues searched) |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1283 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1284 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1285 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1286 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1287 Initial search space (Z): 2 [actual number of targets] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1288 Domain search space (domZ): 2 [number of targets reported over threshold] |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1289 # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1290 # Mc/sec: 2.72 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1291 // |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1292 Query: HBB_ORNAN [L=146] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1293 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1294 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1295 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1296 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1297 1.6e-78 248.9 0.3 1.8e-78 248.8 0.3 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1298 5.8e-14 39.5 0.1 6.3e-14 39.4 0.1 1.0 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1299 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1300 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1301 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1302 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1303 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1304 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1305 1 ! 248.8 0.3 1.8e-78 1.8e-78 1 146 [] 2 147 .] 2 147 .] 1.00 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1306 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1307 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1308 == domain 1 score: 248.8 bits; conditional E-value: 1.8e-78 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1309 HBB_ORNAN 1 vhlsggeksavtnlwgkvninelggealgrllvvypwtqrffeafgdlssagavmgnpkvkahgakvltsfgdalknlddlkgtfaklselhcdklhvdpenfnrlgnvlivvlarhfskdfspevqaawqklvsgvahalghkyh 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1310 vhl+ eksavt lwgkvn++e+ggealgrllvvypwtqrffe+fgdls+ avmgnpkvkahg kvl +f+d l +ld+lkgtfa lselhcdklhvdpenf lgnvl+ vla+hf k+f+p vqaa+qk+v+gva+al+hkyh |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1311 sp|P02024|HBB_GORGO 2 VHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH 147 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1312 79***********************************************************************************************************************************************9 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1313 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1314 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1315 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1316 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1317 1 ! 39.4 0.1 6.3e-14 6.3e-14 3 135 .. 3 137 .. 1 148 [. 0.89 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1318 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1319 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1320 == domain 1 score: 39.4 bits; conditional E-value: 6.3e-14 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1321 HBB_ORNAN 3 lsggeksavtnlwgkvninelg..gealgrllvvypwtqrffeafgdlssagavmgnpkvkahgakvltsfgdalknlddlkgtfaklselhcdklhvdpenfnrlgnvlivvlarhfskdfspevqaawqklvs 135 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1322 ls ge v ++w+kv + g + l rl+ +p t + f+ f l + + + ++ +k hg vlt++g lk ++ + l++ h+ k + + + ++ +i vl + df + q a k + |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1323 sp|P02185|MYG_PHYCD 3 LSEGEWQLVLHVWAKVEADVAGhgQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALE 137 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1324 7899************8776643167899******************************************************************8888888899999999999888899*********999776 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1325 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1326 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1327 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1328 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1329 ------------------------------------- |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1330 Query model(s): 1 (146 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1331 Target sequences: 2 (301 residues searched) |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1332 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1333 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1334 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1335 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1336 Initial search space (Z): 2 [actual number of targets] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1337 Domain search space (domZ): 2 [number of targets reported over threshold] |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1338 # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1339 # Mc/sec: 2.63 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1340 // |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1341 Query: HBB_TACAC [L=146] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1342 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1343 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1344 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1345 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1346 2.2e-79 251.4 0.3 2.4e-79 251.3 0.3 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1347 2.3e-12 34.1 0.2 2.5e-12 34.0 0.2 1.0 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1348 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1349 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1350 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1351 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1352 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1353 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1354 1 ! 251.3 0.3 2.4e-79 2.4e-79 1 146 [] 2 147 .] 2 147 .] 1.00 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1355 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1356 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1357 == domain 1 score: 251.3 bits; conditional E-value: 2.4e-79 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1358 HBB_TACAC 1 vhlsgsektavtnlwghvnvnelggealgrllvvypwtqrffesfgdlssadavmgnakvkahgakvltsfgdalknldnlkgtfaklselhcdklhvdpenfnrlgnvlvvvlarhfskeftpeaqaawqklvsgvshalahkyh 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1359 vhl+ ek+avt lwg vnv+e+ggealgrllvvypwtqrffesfgdls+ davmgn kvkahg kvl +f+d l +ldnlkgtfa lselhcdklhvdpenf lgnvlv vla+hf keftp qaa+qk+v+gv++alahkyh |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1360 sp|P02024|HBB_GORGO 2 VHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH 147 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1361 7************************************************************************************************************************************************9 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1362 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1363 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1364 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1365 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1366 1 ! 34.0 0.2 2.5e-12 2.5e-12 3 145 .. 3 147 .. 1 148 [. 0.87 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1367 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1368 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1369 == domain 1 score: 34.0 bits; conditional E-value: 2.5e-12 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1370 HBB_TACAC 3 lsgsektavtnlwghvnvnelg..gealgrllvvypwtqrffesfgdlssadavmgnakvkahgakvltsfgdalknldnlkgtfaklselhcdklhvdpenfnrlgnvlvvvlarhfskeftpeaqaawqklvsgvshalahky 145 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1371 ls e v ++w+ v + g + l rl+ +p t + f+ f l + + ++ +k hg vlt++g lk + ++ + l++ h+ k + + + ++ ++ vl + +f +aq a k + +a ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1372 sp|P02185|MYG_PHYCD 3 LSEGEWQLVLHVWAKVEADVAGhgQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKY 147 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1373 566677789999*9998766542168899*******************9999999999*************************************8888888899999999999877889**********999887777777666 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1374 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1375 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1376 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1377 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1378 ------------------------------------- |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1379 Query model(s): 1 (146 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1380 Target sequences: 2 (301 residues searched) |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1381 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1382 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1383 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1384 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1385 Initial search space (Z): 2 [actual number of targets] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1386 Domain search space (domZ): 2 [number of targets reported over threshold] |
4
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1387 # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
iuc
parents:
0
diff
changeset
|
1388 # Mc/sec: 2.82 |
0
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1389 // |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1390 Query: HBE_PONPY [L=146] |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1391 Scores for complete sequences (score includes all domains): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1392 --- full sequence --- --- best 1 domain --- -#dom- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1393 E-value score bias E-value score bias exp N Sequence Description |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1394 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1395 1.9e-80 254.8 0.2 2.2e-80 254.6 0.2 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1396 1.8e-13 37.8 0.2 2.1e-13 37.6 0.2 1.0 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1397 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1398 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1399 Domain annotation for each sequence (and alignments): |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1400 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1401 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1402 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1403 1 ! 254.6 0.2 2.2e-80 2.2e-80 1 146 [] 2 147 .] 2 147 .] 1.00 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1404 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1405 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1406 == domain 1 score: 254.6 bits; conditional E-value: 2.2e-80 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1407 HBE_PONPY 1 vhftaeekaavtslwskmnveeaggealgrllvvypwtqrffdsfgnlsspsailgnpkvkahgkkvltsfgdaiknmdnlkttfaklselhcdklhvdpenfkllgnvmviilathfgkeftpevqaawqklvsavaialahkyh 146 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1408 vh+t eek+avt+lw k+nv+e ggealgrllvvypwtqrff+sfg+ls+p a++gnpkvkahgkkvl +f+d + ++dnlk tfa lselhcdklhvdpenfkllgnv+v +la hfgkeftp vqaa+qk+v+ va alahkyh |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1409 sp|P02024|HBB_GORGO 2 VHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH 147 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1410 7************************************************************************************************************************************************9 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1411 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1412 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1413 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1414 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1415 1 ! 37.6 0.2 2.1e-13 2.1e-13 10 145 .. 10 147 .. 3 148 .. 0.90 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1416 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1417 Alignments for each domain: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1418 == domain 1 score: 37.6 bits; conditional E-value: 2.1e-13 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
|
1419 HBE_PONPY 10 avtslwskmnveeag..gealgrllvvypwtqrffdsfgnlsspsailgnpkvkahgkkvltsfgdaiknmdnlkttfaklselhcdklhvdpenfkllgnvmviilathfgkeftpevqaawqklvsavaialahky 145 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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1420 v +w+k+ + ag + l rl+ +p t + fd f +l + + + ++ +k hg vlt++g +k + + + l++ h+ k + + +++++ ++ +l ++ +f + q a k + +a ky |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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1421 sp|P02185|MYG_PHYCD 10 LVLHVWAKVEADVAGhgQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKY 147 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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1422 57789***99998864157899******************************************************************99999999********9999988899**********99888777777766 PP |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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1423 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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1424 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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1425 |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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1426 Internal pipeline statistics summary: |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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1427 ------------------------------------- |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
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1428 Query model(s): 1 (146 nodes) |
be0cc39776f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
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1429 Target sequences: 2 (301 residues searched) |
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f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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1430 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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1431 Passed bias filter: 2 (1); expected 0.0 (0.02) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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1432 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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1433 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
f239ab5f45f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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1434 Initial search space (Z): 2 [actual number of targets] |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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1435 Domain search space (domZ): 2 [number of targets reported over threshold] |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
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1436 # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
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1437 # Mc/sec: 1.68 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
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