Mercurial > repos > iuc > hmmer_nhmmer
comparison nhmmer.xml @ 9:54b92ae4f75b draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 721504306833ba97c91f285e5bfd86efc04875ee
| author | iuc |
|---|---|
| date | Sun, 25 Feb 2024 18:34:55 +0000 |
| parents | 2ec5e1ad1da7 |
| children |
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| 8:2ec5e1ad1da7 | 9:54b92ae4f75b |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool id="hmmer_nhmmer" name="nhmmer" version="@TOOL_VERSION@+galaxy1"> | 2 <tool id="hmmer_nhmmer" name="nhmmer" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> |
| 3 <description>search a DNA model or alignment against a DNA database (BLASTN-like)</description> | 3 <description>search a DNA model or alignment against a DNA database (BLASTN-like)</description> |
| 4 <macros> | 4 <macros> |
| 5 <import>macros.xml</import> | 5 <import>macros.xml</import> |
| 6 </macros> | 6 </macros> |
| 7 <expand macro="bio_tools"/> | 7 <expand macro="bio_tools"/> |
| 8 <expand macro="requirements"/> | 8 <expand macro="requirements"/> |
| 9 <expand macro="stdio"/> | 9 <command detect_errors="aggressive"><![CDATA[ |
| 10 <command><![CDATA[ | |
| 11 @ADDTHREADS@ | 10 @ADDTHREADS@ |
| 12 nhmmer | 11 nhmmer |
| 13 | 12 |
| 14 @OFORMAT_WITH_OPTS@ | 13 @OFORMAT_WITH_OPTS@ |
| 15 @HSSI@ | 14 @HSSI@ |
| 46 <param name="hmmfile" value="MADE1.hmm"/> | 45 <param name="hmmfile" value="MADE1.hmm"/> |
| 47 <param name="seqfile" value="dna_target.fa"/> | 46 <param name="seqfile" value="dna_target.fa"/> |
| 48 <expand macro="oformat_test" /> | 47 <expand macro="oformat_test" /> |
| 49 <param name="oformat" value="tblout,dfamtblout,aliscoresout"/> | 48 <param name="oformat" value="tblout,dfamtblout,aliscoresout"/> |
| 50 <expand macro="seed_test" /> | 49 <expand macro="seed_test" /> |
| 51 <output name="output" file="nhmmer.out" lines_diff="16"> | 50 <output name="output" file="nhmmer.out" lines_diff="18"> |
| 52 <expand macro="assert_out" tool="nhmmer"/> | 51 <expand macro="assert_out" tool="nhmmer"/> |
| 53 </output> | 52 </output> |
| 54 <output name="tblout" file="nhmmer.out.tblout" lines_diff="12"> | 53 <output name="tblout" file="nhmmer.out.tblout" lines_diff="12"> |
| 55 <expand macro="assert_tblout" tool="nhmmer"/> | 54 <expand macro="assert_tblout" tool="nhmmer"/> |
| 56 </output> | 55 </output> |