Mercurial > repos > iuc > hmmer_nhmmer
diff test-data/globins-45-align.sto @ 5:b4fe2f703b4b draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7d31599a80c15f11ed00b2b3cbfb77ed6dfc8f3d"
| author | iuc |
|---|---|
| date | Tue, 16 Jun 2020 05:38:43 -0400 |
| parents | f239ab5f45f4 |
| children |
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--- a/test-data/globins-45-align.sto Mon Jun 11 15:52:05 2018 -0400 +++ b/test-data/globins-45-align.sto Tue Jun 16 05:38:43 2020 -0400 @@ -13,47 +13,47 @@ MYG_MOUSE g--LSDGEWQLVLNVWGKVEADLAGHGQEVLIGLFKTHPETLDKFDKFKNLKSEEDMKGSEDLKKHGCTVLTALGTILKK-KGQHAAEIQPLAQSHATKHKIPVKYLEFISEIIIEVLKKRHSGDFGADAQGAMSKALELFRNDIAAKYKelgfqg #=GR MYG_MOUSE PP 8..89***************************************************************************.99******************************************************************7****** MYG_MUSAN v------DWEKVNSVWSAVESDLTAIGQNILLRLFEQYPESQNHFPKFKNKS-LGELKDTADIKAQADTVLSALGNIVKK-KGSHSQPVKALAATHITTHKIPPHYFTKITTIAVDVLSEMYPSEMNAQVQAAFSGAFKIICSDIEKEYKaanfqg -#=GR MYG_MUSAN PP 7......89***************************************9877.89*************************.99****************************************************************997****** +#=GR MYG_MUSAN PP 7......89***************************************9877.99*************************.99****************************************************************997****** HBA_AILME .-VLSPADKTNVKATWDKIGGHAGEYGGEALERTFASFPTTKTYFPHF-DLS-----PGSAQVKAHGKKVADALTTAVGHLD-DLPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLASHHPAEFTPAVHASLDKFFSAVSTVLTSKYR...... -#=GR HBA_AILME PP ..69********************************************.9**.....9***********************9.******************************************************************7...... +#=GR HBA_AILME PP ..69********************************************.***.....9************************.******************************************************************7...... HBA_PROLO .-VLSPADKANIKATWDKIGGHAGEYGGEALERTFASFPTTKTYFPHF-DLS-----PGSAQVKAHGKKVADALTLAVGHLD-DLPGALSALSDLHAYKLRVDPVNFKLLSHCLLVTLACHHPAEFTPAVHASLDKFFTSVSTVLTSKYR...... -#=GR HBA_PROLO PP ..69********************************************.9**.....9***********************9.******************************************************************7...... +#=GR HBA_PROLO PP ..69********************************************.***.....9************************.******************************************************************7...... HBA_PAGLA .-VLSSADKNNIKATWDKIGSHAGEYGAEALERTFISFPTTKTYFPHF-DLS-----HGSAQVKAHGKKVADALTLAVGHLE-DLPNALSALSDLHAYKLRVDPVNFKLLSHCLLVTLACHHPAEFTPAVHSALDKFFSAVSTVLTSKYR...... #=GR HBA_PAGLA PP ..69********************************************.***.....***********************98.9*****************************************************************7...... HBA_MACFA .-VLSPADKTNVKAAWGKVGGHAGEYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSAQVKGHGKKVADALTLAVGHVD-DMPQALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR...... -#=GR HBA_MACFA PP ..69********************************************.***.....************************9.******************************************************************7...... +#=GR HBA_MACFA PP ..69********************************************.***.....*************************.******************************************************************7...... HBA_MACSI .-VLSPADKTNVKDAWGKVGGHAGEYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSAQVKGHGKKVADALTLAVGHVD-DMPQALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR...... -#=GR HBA_MACSI PP ..69********************************************.***.....************************9.******************************************************************7...... +#=GR HBA_MACSI PP ..69********************************************.***.....*************************.******************************************************************7...... HBA_PONPY .-VLSPADKTNVKTAWGKVGAHAGDYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSAQVKDHGKKVADALTNAVAHVD-DMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR...... -#=GR HBA_PONPY PP ..69********************************************.***.....************************9.******************************************************************7...... +#=GR HBA_PONPY PP ..69********************************************.***.....*************************.******************************************************************7...... HBA2_GALCR .-VLSPTDKSNVKAAWEKVGAHAGDYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSTQVKGHGKKVADALTNAVLHVD-DMPSALSALSDLHAHKLRVDPVNFKLLRHCLLVTLACHHPAEFTPAVHASLDKFMASVSTVLTSKYR...... -#=GR HBA2_GALCR PP ..69********************************************.***.....************************9.******************************************************************7...... +#=GR HBA2_GALCR PP ..69********************************************.***.....*************************.******************************************************************7...... HBA_MESAU .-VLSAKDKTNISEAWGKIGGHAGEYGAEALERMFFVYPTTKTYFPHF-DVS-----HGSAQVKGHGKKVADALTNAVGHLD-DLPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLANHHPADFTPAVHASLDKFFASVSTVLTSKYR...... -#=GR HBA_MESAU PP ..69********************************************.888.....************************9.******************************************************************7...... +#=GR HBA_MESAU PP ..69********************************************.888.....*************************.******************************************************************7...... HBA2_BOSMU .-VLSAADKGNVKAAWGKVGGHAAEYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSAQVKGHGAKVAAALTKAVGHLD-DLPGALSELSDLHAHKLRVDPVNFKLLSHSLLVTLASHLPSDFTPAVHASLDKFLANVSTVLTSKYR...... -#=GR HBA2_BOSMU PP ..69********************************************.***.....************************9.******************************************************************7...... +#=GR HBA2_BOSMU PP ..69********************************************.***.....*************************.******************************************************************7...... HBA_ERIEU .-VLSATDKANVKTFWGKLGGHGGEYGGEALDRMFQAHPTTKTYFPHF-DLN-----PGSAQVKGHGKKVADALTTAVNNLD-DVPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLALHHPADFTPAVHASLDKFLATVATVLTSKYR...... -#=GR HBA_ERIEU PP ..69********************************************.999.....9***********************9.9*****************************************************************7...... +#=GR HBA_ERIEU PP ..69********************************************.999.....9************************.******************************************************************7...... HBA_FRAPO .-VLSAADKNNVKGIFGKISSHAEDYGAEALERMFITYPSTKTYFPHF-DLS-----HGSAQVKGHGKKVVAALIEAANHID-DIAGTLSKLSDLHAHKLRVDPVNFKLLGQCFLVVVAIHHPSALTPEVHASLDKFLCAVGNVLTAKYR...... -#=GR HBA_FRAPO PP ..69********************************************.***.....************************9.9*****************************************************************7...... +#=GR HBA_FRAPO PP ..69********************************************.***.....*************************.******************************************************************7...... HBA_PHACO .-VLSAADKNNVKGIFTKIAGHAEEYGAEALERMFITYPSTKTYFPHF-DLS-----HGSAQIKGHGKKVVAALIEAVNHID-DITGTLSKLSDLHAHKLRVDPVNFKLLGQCFLVVVAIHHPSALTPEVHASLDKFLCAVGTVLTAKYR...... -#=GR HBA_PHACO PP ..69********************************************.***.....************************9.9*****************************************************************7...... +#=GR HBA_PHACO PP ..69********************************************.***.....*************************.******************************************************************7...... HBA_TRIOC .-VLSANDKTNVKTVFTKITGHAEDYGAETLERMFITYPPTKTYFPHF-DLH-----HGSAQIKAHGKKVVGALIEAVNHID-DIAGALSKLSDLHAQKLRVDPVNFKLLGQCFLVVVAIHHPSVLTPEVHASLDKFLCAVGNVLSAKYR...... -#=GR HBA_TRIOC PP ..69********************************************.999.....************************9.9*****************************************************************7...... +#=GR HBA_TRIOC PP ..69********************************************.999.....*************************.******************************************************************7...... HBA_ANSSE .-VLSAADKGNVKTVFGKIGGHAEEYGAETLQRMFQTFPQTKTYFPHF-DLQ-----PGSAQIKAHGKKVAAALVEAANHID-DIAGALSKLSDLHAQKLRVDPVNFKFLGHCFLVVLAIHHPSLLTPEVHASMDKFLCAVATVLTAKYR...... -#=GR HBA_ANSSE PP ..69********************************************.999.....9***********************9.9*****************************************************************7...... +#=GR HBA_ANSSE PP ..69********************************************.999.....9************************.******************************************************************7...... HBA_COLLI .-VLSANDKSNVKAVFAKIGGQAGDLGGEALERLFITYPQTKTYFPHF-DLS-----HGSAQIKGHGKKVAEALVEAANHID-DIAGALSKLSDLHAQKLRVDPVNFKLLGHCFLVVVAVHFPSLLTPEVHASLDKFVLAVGTVLTAKYR...... -#=GR HBA_COLLI PP ..69********************************************.***.....************************9.9*****************************************************************7...... +#=GR HBA_COLLI PP ..69********************************************.***.....*************************.******************************************************************7...... HBAD_CHLME m--LTADDKKLLTQLWEKVAGHQEEFGSEALQRMFLTYPQTKTYFPHF-DLH-----PGSEQVRGHGKKVAAALGNAVKSLD-NLSQALSELSNLHAYNLRVDPANFKLLAQCFQVVLATHLGKDYSPEMHAAFDKFLSAVAAVLAEKYR...... #=GR HBAD_CHLME PP 6..89*******************************************.999.....9************************.******************************************************************7...... HBAD_PASMO m--LTAEDKKLIQQIWGKLGGAEEEIGADALWRMFHSYPSTKTYFPHF-DLS-----QGSDQIRGHGKKVVAALSNAIKNLD-NLSQALSELSNLHAYNLRVDPVNFKFLSQCLQVSLATRLGKEYSPEVHSAVDKFMSAVASVLAEKYR...... -#=GR HBAD_PASMO PP 6..99*******************************************.9**.....9************************.******************************************************************7...... +#=GR HBAD_PASMO PP 6..99*******************************************.***.....9************************.******************************************************************7...... HBAZ_HORSE s--LTKAERTMVVSIWGKISMQADAVGTEALQRLFSSYPQTKTYFPHF-DLH-----EGSPQLRAHGSKVAAAVGDAVKSID-NVAGALAKLSELHAYILRVDPVNFKFLSHCLLVTLASRLPADFTADAHAAWDKFLSIVSSVLTEKYR...... #=GR HBAZ_HORSE PP 6..89*******************************************.999.....9************************.******************************************************************7...... HBA4_SALIR s--LSAKDKANVKAIWGKILPKSDEIGEQALSRMLVVYPQTKAYFSHWASVA-----PGSAPVKKHGITIMNQIDDCVGHMD-DLFGFLTKLSELHATKLRVDPTNFKILAHNLIVVIAAYFPAEFTPEIHLSVDKFLQQLALALAEKYR...... -#=GR HBA4_SALIR PP 6..9********************************************7776.....9************************.9*****************************************************************7...... +#=GR HBA4_SALIR PP 6..9********************************************7777.....9************************.9*****************************************************************7...... HBB_ORNAN .VHLSGGEKSAVTNLWGKV--NINELGGEALGRLLVVYPWTQRFFEAFGDLSSAGAVMGNPKVKAHGAKVLTSFGDALKNLD-DLKGTFAKLSELHCDKLHVDPENFNRLGNVLIVVLARHFSKDFSPEVQAAWQKLVSGVAHALGHKYH...... -#=GR HBB_ORNAN PP .69****************..************************************************************9.******************************************************************7...... +#=GR HBB_ORNAN PP .69****************..*************************************************************.******************************************************************7...... HBB_TACAC .VHLSGSEKTAVTNLWGHV--NVNELGGEALGRLLVVYPWTQRFFESFGDLSSADAVMGNAKVKAHGAKVLTSFGDALKNLD-NLKGTFAKLSELHCDKLHVDPENFNRLGNVLVVVLARHFSKEFTPEAQAAWQKLVSGVSHALAHKYH...... #=GR HBB_TACAC PP .69****************..*************************************************************.******************************************************************7...... HBE_PONPY .VHFTAEEKAAVTSLWSKM--NVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVKAHGKKVLTSFGDAIKNMD-NLKTTFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKEFTPEVQAAWQKLVSAVAIALAHKYH...... @@ -67,11 +67,11 @@ HBB_SUNMU .VHLSGEEKACVTGLWGKV--NEDEVGAEALGRLLVVYPWTQRFFDSFGDLSSASAVMGNPKVKAHGKKVLHSLGEGVANLD-NLKGTFAKLSELHCDKLHVDPENFRLLGNVLVVVLASKFGKEFTPPVQAAFQKVVAGVANALAHKYH...... #=GR HBB_SUNMU PP .69****************..99***********************************************************.******************************************************************7...... HBB_CALAR .VHLTGEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMNNPKVKAHGKKVLGAFSDGLTHLD-NLKGTFAHLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGKEFTPVVQAAYQKVVAGVANALAHKYH...... -#=GR HBB_CALAR PP .689***************..*************************************************************.******************************************************************7...... +#=GR HBB_CALAR PP .69****************..*************************************************************.******************************************************************7...... HBB_MANSP .VHLTPEEKTAVTTLWGKV--NVDEVGGEALGRLLVVYPWTQRFFDSFGDLSSPDAVMGNPKVKAHGKKVLGAFSDGLNHLD-NLKGTFAQLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPQVQAAYQKVVAGVANALAHKYH...... #=GR HBB_MANSP PP .69****************..*************************************************************.******************************************************************7...... HBB_URSMA .VHLTGEEKSLVTGLWGKV--NVDEVGGEALGRLLVVYPWTQRFFDSFGDLSSADAIMNNPKVKAHGKKVLNSFSDGLKNLD-NLKGTFAKLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPQVQAAYQKVVAGVANALAHKYH...... -#=GR HBB_URSMA PP .689***************..*************************************************************.******************************************************************7...... +#=GR HBB_URSMA PP .69****************..*************************************************************.******************************************************************7...... HBB_RABIT .VHLSSEEKSAVTALWGKV--NVEEVGGEALGRLLVVYPWTQRFFESFGDLSSANAVMNNPKVKAHGKKVLAAFSEGLSHLD-NLKGTFAKLSELHCDKLHVDPENFRLLGNVLVIVLSHHFGKEFTPQVQAAYQKVVAGVANALAHKYH...... #=GR HBB_RABIT PP .69****************..*************************************************************.******************************************************************7...... HBB_TUPGL .VHLSGEEKAAVTGLWGKV--DLEKVGGQSLGSLLIVYPWTQRFFDSFGDLSSPSAVMSNPKVKAHGKKVLTSFSDGLNHLD-NLKGTFAKLSELHCDKLHVDPENFRLLGNVLVRVLACNFGPEFTPQVQAAFQKVVAGVANALAHKYH...... @@ -79,15 +79,15 @@ HBB_TRIIN .VHLTPEEKALVIGLWAKV--NVKEYGGEALGRLLVVYPWTQRFFEHFGDLSSASAIMNNPKVKAHGEKVFTSFGDGLKHLE-DLKGAFAELSELHCDKLHVDPENFRLLGNVLVCVLARHFGKEFSPEAQAAYQKVVAGVANALAHKYH...... #=GR HBB_TRIIN PP .69****************..***********************************************************98.9*****************************************************************7...... HBB_COLLI v-HWSAEEKQLITSIWGKV--NVADCGAEALARLLIVYPWTQRFFSSFGNLSSATAISGNPNVKAHGKKVLTSFGDAVKNLD-NIKGTFAQLSELHCDKLHVDPENFRLLGDILVIILAAHFGKDFTPECQAAWQKLVRVVAHALARKYH...... -#=GR HBB_COLLI PP 5.779**************..*************************************************************.******************************************************************7...... +#=GR HBB_COLLI PP 5.789**************..*************************************************************.******************************************************************7...... HBB_LARRI v-HWSAEEKQLITGLWGKV--NVADCGAEALARLLIVYPWTQRFFASFGNLSSPTAINGNPMVRAHGKKVLTSFGEAVKNLD-NIKNTFAQLSELHCDKLHVDPENFRLLGDILIIVLAAHFAKDFTPDSQAAWQKLVRVVAHALARKYH...... -#=GR HBB_LARRI PP 5.779**************..*************************************************************.******************************************************************7...... +#=GR HBB_LARRI PP 5.789**************..*************************************************************.******************************************************************7...... HBB1_VAREX v-HWTAEEKQLICSLWGKI--DVGLIGGETLAGLLVIYPWTQRQFSHFGNLSSPTAIAGNPRVKAHGKKVLTSFGDAIKNLD-NIKDTFAKLSELHCDKLHVDPTNFKLLGNVLVIVLADHHGKEFTPAHHAAYQKLVNVVSHSLARRYH...... #=GR HBB1_VAREX PP 6.6799*************..*************************************************************.******************************************************************7...... HBB2_XENTR v-HWTAEEKATIASVWGKV--DIEQDGHDALSRLLVVYPWTQRYFSSFGNLSNVSAVSGNVKVKAHGNKVLSAVGSAIQHLD-DVKSHLKGLSKSHAEDLHVDPENFKRLADVLVIVLAAKLGSAFTPQVQAVWEKLNATLVAALSHGY-f..... -#=GR HBB2_XENTR PP 6.6799*************..************************************************************9.9*************************************************************9988.9..... +#=GR HBB2_XENTR PP 6.6799*************..*************************************************************.**************************************************************9988.9..... HBBL_RANCA v-HWTAEEKAVINSVWQKV--DVEQDGHEALTRLFIVYPWTQRYFSTFGDLSSPAAIAGNPKVHAHGKKILGAIDNAIHNLD-DVKGTLHDLSEEHANELHVDPENFRRLGEVLIVVLGAKLGKAFSPQVQHVWEKFIAVLVDALSHSYH...... -#=GR HBBL_RANCA PP 6.6799*************..************************************************************9.9*****************************************************************7...... +#=GR HBBL_RANCA PP 6.6799*************..*************************************************************.******************************************************************7...... HBB2_TRICR .VHLTAEDRKEIAAILGKV--NVDSLGGQCLARLIVVNPWSRRYFHDFGDLSSCDAICRNPKVLAHGAKVMRSIVEATKHLD-NLREYYADLSVTHSLKFYVDPENFKLFSGIVIVCLALTLQTDFSCHKQLAFEKLMKGVSHALGHGY-...... #=GR HBB2_TRICR PP .69****************..*************************************************************.**************************************************************9988....... #=GC PP_cons .679*****************************************************************************99******************************************************************7......