diff test-data/uniprot_globins_match.out @ 4:be0cc39776f9 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d

--- a/test-data/uniprot_globins_match.out	Sat Apr 07 03:50:51 2018 -0400
+++ b/test-data/uniprot_globins_match.out	Mon Jun 11 15:52:05 2018 -0400
@@ -1,13 +1,13 @@
 # hmmsearch :: search profile(s) against a sequence database
-# HMMER 3.1b2 (February 2015); http://hmmer.org/
-# Copyright (C) 2015 Howard Hughes Medical Institute.
-# Freely distributed under the GNU General Public License (GPLv3).
+# HMMER 3.2 (June 2018); http://hmmer.org/
+# Copyright (C) 2018 Howard Hughes Medical Institute.
+# Freely distributed under the BSD open source license.
 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-# query HMM file:                  /tmp/tmpJW6ntL/files/000/dataset_1.dat
-# target sequence database:        /tmp/tmpJW6ntL/files/000/dataset_2.dat
-# per-seq hits tabular output:     /tmp/tmpJW6ntL/files/000/dataset_4.dat
-# per-dom hits tabular output:     /tmp/tmpJW6ntL/files/000/dataset_5.dat
-# pfam-style tabular hit output:   /tmp/tmpJW6ntL/files/000/dataset_6.dat
+# query HMM file:                  /tmp/tmpp4O0Ju/files/000/dataset_25.dat
+# target sequence database:        /tmp/tmpp4O0Ju/files/000/dataset_26.dat
+# per-seq hits tabular output:     /tmp/tmpp4O0Ju/files/000/dataset_28.dat
+# per-dom hits tabular output:     /tmp/tmpp4O0Ju/files/000/dataset_29.dat
+# pfam-style tabular hit output:   /tmp/tmpp4O0Ju/files/000/dataset_30.dat
 # max ASCII text line length:      unlimited
 # Vit filter P threshold:       <= 0.001
 # Fwd filter P threshold:       <= 1e-05
@@ -15,7 +15,7 @@
 # number of worker threads:        1
 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
 
-Query:       globins4  [M=149]
+Query:       dataset_x  [M=149]
 Scores for complete sequences (score includes all domains):
    --- full sequence ---   --- best 1 domain ---    -#dom-
     E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
@@ -32,7 +32,7 @@
 
   Alignments for each domain:
   == domain 1  score: 222.6 bits;  conditional E-value: 2e-70
-             globins4   2 vLseaektkvkavWakveadveesGadiLvrlfkstPatqefFekFkdLstedelkksadvkkHgkkvldAlsdalakldekleaklkdLselHakklkvdpkyfkllsevlvdvlaarlpkeftadvqaaleKllalvakllaskYk 149
+            dataset_x   2 vLseaektkvkavWakveadveesGadiLvrlfkstPatqefFekFkdLstedelkksadvkkHgkkvldAlsdalakldekleaklkdLselHakklkvdpkyfkllsevlvdvlaarlpkeftadvqaaleKllalvakllaskYk 149
                           vLse+e++ v++vWakveadv+++G+diL+rlfks+P+t+e+F++Fk+L+te+e+k+s+d+kkHg++vl+Al+++l+k ++++ea+lk+L+++Ha+k+k+++ky++++se++++vl++r+p++f+ad+q+a++K+l+l++k++a+kYk
   sp|P02185|MYG_PHYCD   2 VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKK-KGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYK 148
                           8*****************************************************************************.99******************************************************************7 PP
@@ -44,7 +44,7 @@
 
   Alignments for each domain:
   == domain 1  score: 217.0 bits;  conditional E-value: 1e-68
-             globins4   1 vvLseaektkvkavWakveadveesGadiLvrlfkstPatqefFekFkdLstedelkksadvkkHgkkvldAlsdalakldekleaklkdLselHakklkvdpkyfkllsevlvdvlaarlpkeftadvqaaleKllalvakllaskYk 149
+            dataset_x   1 vvLseaektkvkavWakveadveesGadiLvrlfkstPatqefFekFkdLstedelkksadvkkHgkkvldAlsdalakldekleaklkdLselHakklkvdpkyfkllsevlvdvlaarlpkeftadvqaaleKllalvakllaskYk 149
                           v+L+++ek++v+a+W+kv  +v+e+G+++L rl++++P+tq+fFe+F+dLst+d+++++++vk+Hgkkvl+A+sd+la+ld +l++++++LselH++kl+vdp++fkll++vlv+vla++++keft++vqaa++K++a va++la+kY+
   sp|P02024|HBB_GORGO   2 VHLTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLD-NLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH 147
                           69****************..*************************************************************.******************************************************************7 PP
@@ -53,8 +53,8 @@
 
 Internal pipeline statistics summary:
 -------------------------------------
-Query model(s):                              1  (149 nodes)
-Target sequences:                            2  (301 residues searched)
+Query model(s):                            1  (149 nodes)
+Target sequences:                          2  (301 residues searched)
 Passed MSV filter:                         2  (1); expected 0.0 (0.02)
 Passed bias filter:                        2  (1); expected 0.0 (0.02)
 Passed Vit filter:                         2  (1); expected 0.0 (0.001)
@@ -62,6 +62,6 @@
 Initial search space (Z):                  2  [actual number of targets]
 Domain search space  (domZ):               2  [number of targets reported over threshold]
 # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00
-# Mc/sec: inf
+# Mc/sec: 20.02
 //
 [ok]