diff readme.rst @ 0:f239ab5f45f4 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/readme.rst	Sat Jun 25 15:07:17 2016 -0400
@@ -0,0 +1,54 @@
+Galaxy wrapper for HMMER3
+=========================
+
+This wrapper is copyright 2015 by Eric Rasche
+
+HMMER is used for searching sequence databases for homologs of protein
+sequences, and for making protein sequence alignments. It implements methods
+using probabilistic models called profile hidden Markov models (profile HMMs).
+
+Compared to BLAST, FASTA, and other sequence alignment and database search
+tools based on older scoring methodology, HMMER aims to be significantly more
+accurate and more able to detect remote homologs because of the strength of its
+underlying mathematical models. In the past, this strength came at significant
+computational expense, but in the new HMMER3 project, HMMER is now essentially
+as fast as BLAST.
+
+http://hmmer.janelia.org/
+http://hmmer.janelia.org/about
+
+
+Installation
+============
+
+The recommended installation is by means of the toolshed_.
+
+.. _toolshed: http://toolshed.g2.bx.psu.edu/view/iuc/hmmer3
+
+
+History
+=======
+
+* v0.1      - Initial public release
+
+
+Licence (MIT)
+=============
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.