view test-data/MADE1.hmm @ 7:b28e8ed99424 draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 0bccf5220ed6549db7e053f85bbe917326b0a0be"
author iuc
date Wed, 21 Jul 2021 14:11:12 +0000
parents b4fe2f703b4b
children
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HMMER3/f [3.3.2 | Nov 2020]
NAME  MADE1
ACC   DF0000629.2
DESC  MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
LENG  80
MAXL  190
ALPH  DNA
RF    yes
MM    no
CONS  yes
CS    no
MAP   yes
DATE  Fri Jul 16 10:31:17 2021
NSEQ  1997
EFFN  4.772646
CKSUM 3015610723
GA    15.98
TC    32.00
NC    15.90
STATS LOCAL MSV       -8.5015  0.71857
STATS LOCAL VITERBI   -9.4437  0.71857
STATS LOCAL FORWARD   -3.3601  0.71857
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.26505  1.57847  1.62734  1.15507
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03273  4.03273  1.46634  0.26236  0.00000        *
      1   2.88347  2.59729  3.00766  0.19823      1 t x - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03273  4.03273  1.46634  0.26236  1.09861  0.40547
      2   2.84764  2.33775  2.99223  0.22904      2 t x - -
          1.38629  1.38629  1.38629  1.38629
          0.03318  4.11545  4.11545  1.46634  0.26236  1.09861  0.40547
      3   0.23331  2.81609  2.55800  2.64795      3 a x - -
          1.38629  1.38629  1.38629  1.38629
          0.03194  4.15297  4.15297  1.46634  0.26236  1.09861  0.40547
      4   2.10142  2.78158  0.31096  2.48849      4 g x - -
          1.38629  1.38629  1.38629  1.38629
          0.03116  4.17730  4.17730  1.46634  0.26236  1.09861  0.40547
      5   2.03766  2.72525  0.33174  2.44801      5 g x - -
          1.38629  1.38629  1.38629  1.38629
          0.03089  4.19229  4.17979  1.46634  0.26236  1.09861  0.40547
      6   2.50266  2.06695  2.58843  0.33348      6 t x - -
          1.38538  1.38782  1.38660  1.38538
          0.03244  4.19073  4.08723  1.46789  0.26190  1.09694  0.40630
      7   2.60375  2.25725  2.67883  0.28406     12 t x - -
          1.38907  1.38673  1.38907  1.38033
          0.03193  4.10189  4.20735  1.39886  0.28353  1.08252  0.41361
      8   2.19186  2.93555  0.26232  2.71924     14 g x - -
          1.38629  1.38629  1.38629  1.38629
          0.03142  4.21107  4.12859  1.46634  0.26236  1.09861  0.40547
      9   2.07901  2.78051  0.30613  2.56850     15 g x - -
          1.38350  1.38805  1.38560  1.38805
          0.03149  4.16813  4.16598  1.44243  0.26965  1.09240  0.40859
     10   2.57980  2.23058  2.70339  0.28799     18 t x - -
          1.38730  1.38730  1.38730  1.38328
          0.03029  4.19523  4.21518  1.45741  0.26506  1.09679  0.40638
     11   2.09819  2.95912  0.27277  2.74586     21 g x - -
          1.38506  1.38753  1.38753  1.38506
          0.03438  4.20499  3.96976  1.46555  0.26260  1.09847  0.40554
     12   2.73996  0.25202  2.91136  2.26531     26 c x - -
          1.38701  1.38416  1.38701  1.38701
          0.03125  4.18883  4.16044  1.44829  0.26784  1.07539  0.41728
     13   0.27970  2.57147  2.50665  2.45312     28 a x - -
          1.38695  1.38695  1.38433  1.38695
          0.03063  4.20139  4.18737  1.44978  0.26739  1.09652  0.40651
     14   0.27532  2.53583  2.54819  2.48584     30 a x - -
          1.38514  1.38745  1.38514  1.38745
          0.03161  4.20713  4.12095  1.45611  0.26545  1.10038  0.40458
     15   0.22434  2.72071  2.78113  2.61512     33 a x - -
          1.38788  1.38927  1.38318  1.38486
          0.03686  4.17327  3.87329  1.44180  0.26984  1.10484  0.40236
     16   0.43251  2.24579  2.21906  1.99092     37 a x - -
          1.36200  1.39388  1.39592  1.39378
          0.04715  3.92767  3.63579  1.28473  0.32397  1.06747  0.42141
     17   2.14020  2.88555  0.27611  2.69098     41 g x - -
          1.38394  1.38865  1.38865  1.38394
          0.03184  4.19737  4.11610  1.46485  0.26281  1.06375  0.42336
     18   2.54908  2.09631  2.66371  0.31574     46 t x - -
          1.38086  1.39134  1.39054  1.38248
          0.03937  4.05640  3.84942  1.45345  0.26626  1.11413  0.39779
     19   0.45711  2.16557  2.17736  1.97423     57 a x - -
          1.38787  1.39103  1.38646  1.37985
          0.03547  4.14271  3.96510  1.44704  0.26823  1.13642  0.38708
     20   0.30358  2.53734  2.46922  2.32172     66 a x - -
          1.37069  1.39228  1.38994  1.39244
          0.03311  4.09596  4.13961  1.41439  0.27849  1.11423  0.39775
     21   2.54370  2.06068  2.71024  0.31809     74 t x - -
          1.38671  1.38671  1.38837  1.38339
          0.04565  4.21460  3.51159  1.48099  0.25801  1.14016  0.38532
     22   2.44416  2.09512  2.52049  0.34288     84 t x - -
          1.38754  1.39327  1.39136  1.37313
          0.04852  4.04797  3.50981  1.37593  0.29116  1.16476  0.37396
     23   2.14524  2.93015  0.27618  2.64656     88 g x - -
          1.38759  1.38759  1.38243  1.38759
          0.04319  4.15548  3.62703  1.43407  0.27225  1.21251  0.35304
     24   2.08998  0.74813  2.30247  1.19387     90 c x - -
          1.35915  1.41488  1.41633  1.35650
          0.06422  3.83546  3.20373  1.48098  0.25801  1.22299  0.34863
     25   1.44195  2.34602  0.62507  2.02072    106 g x - -
          1.38116  1.39439  1.39704  1.37279
          0.03982  4.11042  3.78798  1.50090  0.25222  1.29946  0.31839
     26   1.95347  2.71204  0.35652  2.38912    131 g x - -
          1.38844  1.40499  1.38340  1.36868
          0.03816  3.94046  4.01750  1.48202  0.25771  1.28081  0.32547
     27   2.17428  2.00153  2.08197  0.46761    151 t x - -
          1.36950  1.40138  1.38862  1.38593
          0.04163  3.96008  3.82973  1.45086  0.26705  1.29520  0.31999
     28   2.63064  2.24524  2.71112  0.28024    170 t x - -
          1.38160  1.39124  1.38588  1.38648
          0.03869  4.04846  3.88745  1.48176  0.25778  1.28474  0.32396
     29   2.65193  2.29047  2.74924  0.26881    194 t x - -
          1.39316  1.38635  1.37265  1.39316
          0.04182  4.06311  3.73956  1.56525  0.23450  1.32387  0.30939
     30   2.64289  2.22300  2.73001  0.28059    215 t x - -
          1.35772  1.41144  1.43663  1.34234
          0.10242  3.97751  2.54313  1.79643  0.18139  1.29085  0.32163
     31   2.26891  2.04957  2.21838  0.41703    248 t x - -
          1.39765  1.43259  1.44535  1.27844
          0.06955  3.31830  3.47470  1.22082  0.34954  0.95096  0.48836
     32   2.04470  2.73226  0.32260  2.51028    280 g x - -
          1.35741  1.43081  1.42275  1.33747
          0.04193  3.93063  3.84295  1.76710  0.18733  1.24156  0.34099
     33   2.35858  0.41780  2.53493  1.78566    317 c x - -
          1.34456  1.41326  1.41477  1.37431
          0.04602  4.01126  3.61681  1.74585  0.19176  1.18563  0.36464
     34   2.12811  0.44070  2.57012  1.82744    347 c x - -
          1.37758  1.40714  1.42610  1.33665
          0.04358  3.89440  3.80370  1.68702  0.20465  1.25818  0.33431
     35   0.38054  2.35727  2.22578  2.17289    388 a x - -
          1.36892  1.40148  1.39605  1.37907
          0.04697  3.84843  3.70605  1.58712  0.22880  1.27648  0.32714
     36   2.58167  2.15098  2.67474  0.30238    439 t x - -
          1.37521  1.39677  1.39678  1.37663
          0.04670  4.02923  3.58127  1.57528  0.23187  1.30572  0.31605
     37   2.40504  2.10297  2.45806  0.35376    465 t x - -
          1.38174  1.43412  1.44016  1.29592
          0.06954  3.75273  3.12982  1.87321  0.16680  1.18134  0.36653
     38   0.51842  2.13748  1.95630  1.92958    512 a x - -
          1.26062  1.52617  1.46618  1.31546
          0.06473  3.52691  3.40282  2.11494  0.12856  1.27426  0.32800
     39   2.41476  0.39430  2.59943  1.81929    550 c x - -
          1.36465  1.40696  1.41230  1.36233
          0.04348  3.90556  3.79796  1.69053  0.20386  1.30248  0.31726
     40   2.38183  2.12623  2.50765  0.34690    578 t x - -
          1.38409  1.39798  1.39794  1.36553
          0.04109  3.97130  3.84392  1.60521  0.22420  1.32862  0.30767
     41   2.66873  2.32268  2.69641  0.26762    592 t x - -
          1.34240  1.42173  1.41470  1.36850
          0.04353  3.85338  3.84491  1.60301  0.22476  1.25846  0.33420
     42   2.53515  2.23303  2.60748  0.30134    609 t x - -
          1.31567  1.43403  1.44808  1.35349
          0.06381  3.89678  3.18177  1.81251  0.17822  1.30796  0.31522
     43   2.08517  1.18879  2.27981  0.75753    646 t x - -
          1.35645  1.49693  1.51284  1.20957
          0.05829  3.38638  3.78127  1.66667  0.20933  1.14206  0.38443
     44   0.34996  2.35638  2.35834  2.24486    675 a x - -
          1.34533  1.40942  1.43949  1.35397
          0.04988  3.81123  3.62941  1.63911  0.21586  1.24598  0.33920
     45   0.39888  2.38014  2.11983  2.15126    701 a x - -
          1.20139  1.47163  1.46073  1.43714
          0.07468  3.08583  3.63931  1.15859  0.37677  1.23926  0.34193
     46   2.25489  2.11327  2.45245  0.37369    725 t x - -
          1.34460  1.45056  1.47624  1.28582
          0.05008  3.62316  3.80979  1.80369  0.17995  1.13293  0.38874
     47   2.07249  2.78660  0.33175  2.35570    764 g x - -
          1.34151  1.44243  1.46346  1.30651
          0.05116  3.79082  3.60105  1.78406  0.18387  1.19531  0.36041
     48   2.02574  2.75520  0.32599  2.49262    792 g x - -
          1.37939  1.40455  1.39773  1.36401
          0.04184  3.99754  3.78911  1.65229  0.21271  1.21129  0.35355
     49   2.51376  0.34589  2.65910  1.95593    824 c x - -
          1.37735  1.38944  1.38564  1.39283
          0.04250  4.03019  3.73634  1.43891  0.27074  1.20591  0.35585
     50   0.37929  2.28294  2.29219  2.18368    833 a x - -
          1.38032  1.40070  1.41036  1.35471
          0.03672  4.01292  4.01873  1.58321  0.22981  1.13819  0.38625
     51   0.30179  2.55721  2.37379  2.40954    853 a x - -
          1.37181  1.42012  1.41076  1.34435
          0.05016  3.87151  3.57224  1.63505  0.21684  1.18702  0.36403
     52   0.27218  2.56723  2.58756  2.44958    883 a x - -
          1.36720  1.41773  1.41688  1.34536
          0.04378  3.95507  3.74330  1.55207  0.23802  1.23311  0.34444
     53   0.32594  2.44712  2.41620  2.27938    911 a x - -
          1.38564  1.39969  1.39229  1.36784
          0.08580  4.05257  2.73572  1.54044  0.24116  1.21220  0.35317
     54   0.53092  2.03055  1.99429  1.93403    934 a x - -
          1.25719  1.43671  1.43475  1.42851
          0.05952  3.35434  3.77879  1.21135  0.35353  0.94763  0.49046
     55   2.32427  0.37751  2.63253  1.93323    960 c x - -
          1.34734  1.38792  1.40168  1.40939
          0.04222  3.98345  3.78472  1.53373  0.24300  1.17391  0.36984
     56   1.96472  0.77648  2.21308  1.23643    983 c x - -
          1.36239  1.39842  1.41816  1.36725
          0.04192  3.86418  3.90814  1.48437  0.25702  1.16188  0.37527
     57   1.38762  2.43385  0.61520  2.10291    999 g x - -
          1.35012  1.39777  1.40329  1.39491
          0.03407  4.06641  4.11297  1.52565  0.24524  1.14553  0.38281
     58   2.65508  0.31503  2.81411  1.96622   1017 c x - -
          1.38281  1.41126  1.38498  1.36664
          0.03307  4.10220  4.13567  1.57966  0.23073  1.16105  0.37565
     59   0.41196  2.32035  2.07858  2.16890   1034 a x - -
          1.38554  1.38554  1.38819  1.38590
          0.03358  4.16772  4.04381  1.44043  0.27027  1.19285  0.36148
     60   0.37748  2.45865  2.09636  2.24468   1037 a x - -
          1.35351  1.39510  1.39860  1.39870
          0.03659  4.01117  4.02751  1.42256  0.27588  1.02829  0.44257
     61   2.57329  2.25117  2.74231  0.28234   1056 t x - -
          1.37970  1.38988  1.38806  1.38757
          0.03371  4.16660  4.03717  1.44400  0.26916  1.07669  0.41661
     62   2.22816  2.19022  2.37918  0.37432   1060 t x - -
          1.38622  1.38744  1.38744  1.38408
          0.03436  4.18286  3.98860  1.43760  0.27115  1.07924  0.41529
     63   0.34842  2.45717  2.22920  2.29357   1062 a x - -
          1.37325  1.39303  1.39303  1.38599
          0.03680  4.05488  3.97426  1.37157  0.29264  1.10504  0.40227
     64   2.56440  0.33133  2.70657  1.97833   1068 c x - -
          1.38051  1.39022  1.38613  1.38834
          0.03425  4.07396  4.09452  1.40426  0.28176  1.06834  0.42095
     65   2.22725  2.12689  2.33973  0.39065   1073 t x - -
          1.38749  1.38362  1.38658  1.38749
          0.03106  4.17886  4.18240  1.43637  0.27153  1.10614  0.40172
     66   2.70567  2.38427  2.77207  0.25041   1075 t x - -
          1.38263  1.38752  1.38752  1.38752
          0.03104  4.20005  4.16238  1.45551  0.26564  1.08260  0.41357
     67   2.77703  2.37312  2.82282  0.24188   1078 t x - -
          1.38348  1.39069  1.38333  1.38769
          0.03659  4.08849  3.95478  1.38473  0.28821  1.09815  0.40570
     68   2.75338  2.37589  2.82611  0.24320   1081 t x - -
          1.39439  1.40072  1.40186  1.34916
          0.04141  3.82736  3.97406  1.27797  0.32657  1.05169  0.42978
     69   2.30274  2.95739  0.24176  2.76754   1093 g x - -
          1.38591  1.38591  1.38745  1.38591
          0.03131  4.20335  4.14281  1.46244  0.26354  1.07083  0.41965
     70   2.79994  0.28200  2.99446  2.00361   1097 c x - -
          1.38629  1.38629  1.38629  1.38629
          0.02990  4.21806  4.21806  1.46634  0.26236  1.08730  0.41117
     71   0.32186  2.49114  2.38278  2.30165   1098 a x - -
          1.38095  1.38549  1.38906  1.38970
          0.03114  4.15948  4.19672  1.44935  0.26752  1.10226  0.40364
     72   2.53966  0.34721  2.53815  1.99924   1103 c x - -
          1.38409  1.38783  1.38783  1.38544
          0.03178  4.15601  4.15995  1.42823  0.27409  1.09282  0.40837
     73   2.68662  0.27379  2.88246  2.15931   1105 c x - -
          1.38629  1.38629  1.38629  1.38629
          0.03005  4.21307  4.21307  1.46634  0.26236  1.09252  0.40852
     74   0.31501  2.49904  2.40066  2.32899   1106 a x - -
          1.38629  1.38629  1.38629  1.38629
          0.03236  4.20966  4.07504  1.46634  0.26236  1.09567  0.40694
     75   0.36972  2.41288  2.17350  2.24680   1107 a x - -
          1.38629  1.38629  1.38629  1.38629
          0.03061  4.19489  4.19489  1.46634  0.26236  1.07976  0.41503
     76   2.42454  0.36916  2.67422  1.88910   1108 c x - -
          1.38629  1.38629  1.38629  1.38629
          0.03111  4.17876  4.17876  1.46634  0.26236  1.09861  0.40547
     77   2.40209  0.35459  2.62494  1.99827   1109 c x - -
          1.38629  1.38629  1.38629  1.38629
          0.03189  4.15446  4.15446  1.46634  0.26236  1.09861  0.40547
     78   2.61838  2.21121  2.70403  0.28691   1110 t x - -
          1.38629  1.38629  1.38629  1.38629
          0.03345  4.10748  4.10748  1.46634  0.26236  1.09861  0.40547
     79   0.16677  3.16394  2.79540  2.99064   1111 a x - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03354  4.03354  1.46634  0.26236  1.09861  0.40547
     80   0.12738  3.34162  3.14941  3.18577   1112 a x - -
          1.38629  1.38629  1.38629  1.38629
          0.01820  4.01567        *  1.46634  0.26236  0.00000        *
//