view test-data/MADE1.nhmmscan_out.tblout @ 7:b28e8ed99424 draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 0bccf5220ed6549db7e053f85bbe917326b0a0be"
author iuc
date Wed, 21 Jul 2021 14:11:12 +0000
parents b4fe2f703b4b
children
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# target name        accession   query name                    accession  hmmfrom hmm to alifrom  ali to envfrom  env to  modlen strand   E-value  score  bias  description of target
#-------------------  ----------          -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- ---------------------
MADE1                DF0000629.2 humanchr1/239220001-239550000 -                4      80  302390  302466  302387  302466      80    +       4e-11   41.3   7.5  MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
MADE1                DF0000629.2 humanchr1/239220001-239550000 -                1      43  174456  174498  174456  174518      80    +     1.9e-08   32.8   8.3  MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
MADE1                DF0000629.2 humanchr1/239220001-239550000 -                1      78  302466  302389  302466  302387      80    -     6.3e-08   31.0   6.7  MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
MADE1                DF0000629.2 humanchr1/239220001-239550000 -               43      80  174493  174456  174513  174456      80    -     4.9e-06   25.0   7.0  MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
MADE1                DF0000629.2 humanchr1/239220001-239550000 -               41      71  304073  304103  304053  304109      80    +         2.2    6.9   7.2  MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
#
# Program:         nhmmscan
# Version:         3.3.2 (Nov 2020)
# Pipeline mode:   SCAN
# Query file:      /tmp/tmp2vk0_a8v/files/7/d/6/dataset_7d62e9c6-1db3-4a28-9770-d56c56ccfb17.dat
# Target file:     localref.hmm
# Option settings: nhmmscan --tblout /tmp/tmp2vk0_a8v/files/7/0/4/dataset_70487df9-4948-42c0-a250-638bcc64487a.dat --dfamtblout /tmp/tmp2vk0_a8v/files/8/0/f/dataset_80fdcb47-0041-4a2c-bc0a-4820ac3c27d0.dat --notextw -E 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --B1 110 --B2 240 --B3 1000 --cpu 0 localref.hmm /tmp/tmp2vk0_a8v/files/7/d/6/dataset_7d62e9c6-1db3-4a28-9770-d56c56ccfb17.dat 
# Current dir:     /tmp/tmp2vk0_a8v/job_working_directory/000/6/working
# Date:            Fri Jul 16 11:22:43 2021
# [ok]