Mercurial > repos > iuc > hmmer_phmmer
comparison phmmer.xml @ 2:3c27cd24641d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit a1a31824fc24d5e652c263b998b7f2363cbd7610
| author | iuc |
|---|---|
| date | Wed, 04 Apr 2018 13:59:18 -0400 |
| parents | 48a88b7a4734 |
| children | ff6e24314c63 |
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| 1:e9a322ffa553 | 2:3c27cd24641d |
|---|---|
| 36 <expand macro="seed"/> | 36 <expand macro="seed"/> |
| 37 </inputs> | 37 </inputs> |
| 38 <outputs> | 38 <outputs> |
| 39 <data format="txt" name="output" label="PHMMER search of $seqfile.name in $seqdb.name"/> | 39 <data format="txt" name="output" label="PHMMER search of $seqfile.name in $seqdb.name"/> |
| 40 <data format="txt" name="tblout" label="Table of per-sequence hits from HMM matches of $seqfile.name in $seqdb.name"> | 40 <data format="txt" name="tblout" label="Table of per-sequence hits from HMM matches of $seqfile.name in $seqdb.name"> |
| 41 <filter>'tblout' in str(oformat)</filter> | 41 <filter>oformat and 'tblout' in oformat</filter> |
| 42 </data> | 42 </data> |
| 43 <data format="txt" name="domtblout" label="Table of per-domain hits from HMM matches of $seqfile.name in $seqdb.name"> | 43 <data format="txt" name="domtblout" label="Table of per-domain hits from HMM matches of $seqfile.name in $seqdb.name"> |
| 44 <filter>'domtblout' in str(oformat)</filter> | 44 <filter>oformat and 'domtblout' in oformat</filter> |
| 45 </data> | 45 </data> |
| 46 <data format="txt" name="pfamtblout" label="Table of per-sequence/per-domain hits from HMM matches of $seqfile.name in $seqdb.name"> | 46 <data format="txt" name="pfamtblout" label="Table of per-sequence/per-domain hits from HMM matches of $seqfile.name in $seqdb.name"> |
| 47 <filter>'pfamtblout' in str(oformat)</filter> | 47 <filter>oformat and 'pfamtblout' in oformat</filter> |
| 48 </data> | 48 </data> |
| 49 </outputs> | 49 </outputs> |
| 50 <tests> | 50 <tests> |
| 51 <test> | 51 <test> |
| 52 <param name="seqfile" value="globins45.fa"/> | 52 <param name="seqfile" value="globins45.fa"/> |