Mercurial > repos > iuc > hmmer_phmmer

comparison test-data/MADE1.nhmmscan_out @ 7:8a791afd99fb draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 0bccf5220ed6549db7e053f85bbe917326b0a0be"
author iuc
date Wed, 21 Jul 2021 14:16:08 +0000
parents c1de05e20868
children
comparison
equal deleted inserted replaced
6:8267b6ad0b45 7:8a791afd99fb
1 # nhmmscan :: search DNA sequence(s) against a DNA profile database 1 # nhmmscan :: search DNA sequence(s) against a DNA profile database
2 # HMMER 3.3 (Nov 2019); http://hmmer.org/ 2 # HMMER 3.3.2 (Nov 2020); http://hmmer.org/
3 # Copyright (C) 2019 Howard Hughes Medical Institute. 3 # Copyright (C) 2020 Howard Hughes Medical Institute.
4 # Freely distributed under the BSD open source license. 4 # Freely distributed under the BSD open source license.
5 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
6 # query sequence file: /tmp/tmpqydies2m/files/f/a/5/dataset_fa559c91-0436-48cb-a47d-20062d4af284.dat 6 # query sequence file: /tmp/tmp2vk0_a8v/files/7/d/6/dataset_7d62e9c6-1db3-4a28-9770-d56c56ccfb17.dat
7 # target HMM database: localref.hmm 7 # target HMM database: localref.hmm
8 # per-seq hits tabular output: /tmp/tmpqydies2m/files/4/7/2/dataset_4723128d-8711-4edb-8afe-a68476a6c127.dat 8 # per-seq hits tabular output: /tmp/tmp2vk0_a8v/files/7/0/4/dataset_70487df9-4948-42c0-a250-638bcc64487a.dat
9 # hits output in Dfam format: /tmp/tmpqydies2m/files/1/a/e/dataset_1aeea50b-1263-4750-8237-4fc3f10c0999.dat 9 # hits output in Dfam format: /tmp/tmp2vk0_a8v/files/8/0/f/dataset_80fdcb47-0041-4a2c-bc0a-4820ac3c27d0.dat
10 # max ASCII text line length: unlimited 10 # max ASCII text line length: unlimited
11 # Vit filter P threshold: <= 0.001 11 # Vit filter P threshold: <= 0.001
12 # Fwd filter P threshold: <= 1e-05 12 # Fwd filter P threshold: <= 1e-05
13 # random number seed set to: 4 13 # random number seed set to: 4
14 # number of worker threads: 1 14 # number of worker threads: 0
15 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 15 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
16 16
17 Query: humanchr1/239220001-239550000 [L=330000] 17 Query: humanchr1/239220001-239550000 [L=330000]
18 Scores for complete hit: 18 Scores for complete hit:
19 E-value score bias Model start end Description 19 E-value score bias Model start end Description
101 Residues passing SSV filter: 60770 (0.0921); expected (0.02) 101 Residues passing SSV filter: 60770 (0.0921); expected (0.02)
102 Residues passing bias filter: 35792 (0.0542); expected (0.02) 102 Residues passing bias filter: 35792 (0.0542); expected (0.02)
103 Residues passing Vit filter: 1612 (0.00244); expected (0.001) 103 Residues passing Vit filter: 1612 (0.00244); expected (0.001)
104 Residues passing Fwd filter: 1194 (0.00181); expected (1e-05) 104 Residues passing Fwd filter: 1194 (0.00181); expected (1e-05)
105 Total number of hits: 5 (0.000405) 105 Total number of hits: 5 (0.000405)
106 # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 106 # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01
107 # Mc/sec: 2289.06 107 # Mc/sec: 2765.21
108 // 108 //
109 [ok] 109 [ok]