Mercurial > repos > iuc > hmmer_phmmer
changeset 2:3c27cd24641d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit a1a31824fc24d5e652c263b998b7f2363cbd7610
| author | iuc |
|---|---|
| date | Wed, 04 Apr 2018 13:59:18 -0400 |
| parents | e9a322ffa553 |
| children | ff6e24314c63 |
| files | phmmer.xml tool_dependencies.xml |
| diffstat | 2 files changed, 3 insertions(+), 9 deletions(-) [+] |
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--- a/phmmer.xml Mon Nov 14 15:12:18 2016 -0500 +++ b/phmmer.xml Wed Apr 04 13:59:18 2018 -0400 @@ -38,13 +38,13 @@ <outputs> <data format="txt" name="output" label="PHMMER search of $seqfile.name in $seqdb.name"/> <data format="txt" name="tblout" label="Table of per-sequence hits from HMM matches of $seqfile.name in $seqdb.name"> - <filter>'tblout' in str(oformat)</filter> + <filter>oformat and 'tblout' in oformat</filter> </data> <data format="txt" name="domtblout" label="Table of per-domain hits from HMM matches of $seqfile.name in $seqdb.name"> - <filter>'domtblout' in str(oformat)</filter> + <filter>oformat and 'domtblout' in oformat</filter> </data> <data format="txt" name="pfamtblout" label="Table of per-sequence/per-domain hits from HMM matches of $seqfile.name in $seqdb.name"> - <filter>'pfamtblout' in str(oformat)</filter> + <filter>oformat and 'pfamtblout' in oformat</filter> </data> </outputs> <tests>
--- a/tool_dependencies.xml Mon Nov 14 15:12:18 2016 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,6 +0,0 @@ -<?xml version="1.0"?> -<tool_dependency> - <package name="hmmer" version="3.1b2"> - <repository changeset_revision="2a1881410dc9" name="package_hmmer_3_1b2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> - </package> -</tool_dependency>