Mercurial > repos > iuc > homer_annotatepeaks

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e6639e130c5bf50f489dd09e38a1cbc712280fff
author iuc
date Fri, 07 Apr 2023 15:03:57 +0000
parents adab852c8216
children
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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1 <HTML><HEAD><TITLE>Motif 6</TITLE></HEAD>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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2 <H2>Information for 3-GTTGCTGCCA (Motif 6)</H2>
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3 <svg width="255" height="50">
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4 <g font-family="Arial" font-weight="bold" font-size="66.5">
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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88 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,126,39)">T</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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89 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,125,34)">G</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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91 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,152,49)">A</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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92 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,150,44)">G</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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93 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,151,39)">T</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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94 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,150,34)">C</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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96 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,175,49)">C</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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97 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,175,44)">G</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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98 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,176,39)">T</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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99 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,177,34)">A</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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101 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,200,49)">C</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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102 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,200,44)">G</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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103 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,201,39)">T</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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104 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,202,34)">A</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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106 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,227,49)">A</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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107 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,225,44)">G</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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108 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,226,39)">T</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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109 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,225,34)">C</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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111 </g>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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112 </svg>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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113 <BR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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114 <TABLE border="1" cellpading="0" cellspacing="0">
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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115 <TR><TD>p-value:</TD><TD>1e-1</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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116 <TR><TD>log p-value:</TD><TD>-2.907e+00</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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117 <TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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118 <TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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119 <TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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120 <TR><TD>Number of Background Sequences with motif</TD><TD>219.9</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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121 <TR><TD>Percentage of Background Sequences with motif</TD><TD>5.49%</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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122 <TR><TD>Average Position of motif in Targets</TD><TD>140.0 +/- 0.0bp</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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123 <TR><TD>Average Position of motif in Background</TD><TD>103.4 +/- 83.3bp</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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124 <TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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125 <TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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126 <TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif6.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif6RV.motif">reverse opposite</A></TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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127 <TR><TD>SVG Files for Logos:</TD><TD><A HREF="motif6.logo.svg">forward logo</A><BR/><A HREF="motif6RV.logo.svg">reverse opposite</A></TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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128 </TABLE>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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129 <H3>Matches to Known Motifs</H3>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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130 <TABLE border="1" cellpading="0" cellspacing="0">
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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131 <TR><TD>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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132 <H4>DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer</H4>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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133 <TABLE><TR><TD>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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134 <TABLE>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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135 <TR><TD>Match Rank:</TD><TD>1</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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136 <TR><TD>Score:</TD><TD>0.66</TD</TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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137 <TR><TD>Offset:</TD><TD>1</TD</TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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138 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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139 <TR><TD>Alignment:</TD><TD><FONT face="courier">GTTGCTGCCA-</FONT><BR><FONT face="courier">-TTCCCGCCAA</FONT></TD></TR></TABLE>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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140 </TD><TD>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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141 <svg width="280" height="50">
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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142 <g font-family="Arial" font-weight="bold" font-size="66.5">
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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143 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,2,49)">A</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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144 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,0,44)">C</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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145 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,1,39)">T</text>
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146 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,0,34)">G</text>
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148 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,27,49)">A</text>
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149 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,25,44)">C</text>
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260 </svg>
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262 </TD></TR></TABLE>
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263 </TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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264 <TR><TD>
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265 <H4>NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer</H4>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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266 <TABLE><TR><TD>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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267 <TABLE>
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268 <TR><TD>Match Rank:</TD><TD>2</TD></TR>
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269 <TR><TD>Score:</TD><TD>0.65</TD</TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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270 <TR><TD>Offset:</TD><TD>4</TD</TR>
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271 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
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272 <TR><TD>Alignment:</TD><TD><FONT face="courier">GTTGCTGCCA--</FONT><BR><FONT face="courier">----TTGCCAAG</FONT></TD></TR></TABLE>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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273 </TD><TD>
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274 <svg width="305" height="50">
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405 </TD></TR></TABLE>
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406 </TD></TR>
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407 <TR><TD>
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iuc
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408 <H4>HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer</H4>
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iuc
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409 <TABLE><TR><TD>
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iuc
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410 <TABLE>
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iuc
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411 <TR><TD>Match Rank:</TD><TD>3</TD></TR>
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iuc
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412 <TR><TD>Score:</TD><TD>0.65</TD</TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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413 <TR><TD>Offset:</TD><TD>2</TD</TR>
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iuc
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414 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
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415 <TR><TD>Alignment:</TD><TD><FONT face="courier">GTTGCTGCCA</FONT><BR><FONT face="courier">--VGCTGGCA</FONT></TD></TR></TABLE>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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416 </TD><TD>
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417 <svg width="255" height="50">
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iuc
parents:
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527
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528 </TD></TR></TABLE>
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iuc
parents:
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529 </TD></TR>
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530 <TR><TD>
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iuc
parents:
diff changeset
531 <H4>PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer</H4>
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iuc
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diff changeset
532 <TABLE><TR><TD>
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iuc
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533 <TABLE>
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iuc
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diff changeset
534 <TR><TD>Match Rank:</TD><TD>4</TD></TR>
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iuc
parents:
diff changeset
535 <TR><TD>Score:</TD><TD>0.65</TD</TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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diff changeset
536 <TR><TD>Offset:</TD><TD>-4</TD</TR>
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iuc
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diff changeset
537 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
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diff changeset
538 <TR><TD>Alignment:</TD><TD><FONT face="courier">----GTTGCTGCCA-</FONT><BR><FONT face="courier">AGATGCTRCTRCCHT</FONT></TD></TR></TABLE>
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iuc
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539 </TD><TD>
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540 <svg width="380" height="50">
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701 </TD></TR></TABLE>
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702 </TD></TR>
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704 <H4>NFIX/MA0671.1/Jaspar</H4>
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705 <TABLE><TR><TD>
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706 <TABLE>
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diff changeset
707 <TR><TD>Match Rank:</TD><TD>5</TD></TR>
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708 <TR><TD>Score:</TD><TD>0.64</TD</TR>
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709 <TR><TD>Offset:</TD><TD>3</TD</TR>
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710 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
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711 <TR><TD>Alignment:</TD><TD><FONT face="courier">GTTGCTGCCA--</FONT><BR><FONT face="courier">---CGTGCCAAG</FONT></TD></TR></TABLE>
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712 </TD><TD>
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844 </TD></TR></TABLE>
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845 </TD></TR>
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846 <TR><TD>
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iuc
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847 <H4>Aef1/dmmpmm(Pollard)/fly</H4>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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848 <TABLE><TR><TD>
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849 <TABLE>
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diff changeset
850 <TR><TD>Match Rank:</TD><TD>6</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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diff changeset
851 <TR><TD>Score:</TD><TD>0.63</TD</TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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diff changeset
852 <TR><TD>Offset:</TD><TD>-1</TD</TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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diff changeset
853 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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diff changeset
854 <TR><TD>Alignment:</TD><TD><FONT face="courier">-GTTGCTGCCA</FONT><BR><FONT face="courier">TGTTGTTG---</FONT></TD></TR></TABLE>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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855 </TD><TD>
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iuc
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976
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
977 </TD></TR></TABLE>
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iuc
parents:
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978 </TD></TR>
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979 <TR><TD>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
980 <H4>SUM1(MacIsaac)/Yeast</H4>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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diff changeset
981 <TABLE><TR><TD>
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iuc
parents:
diff changeset
982 <TABLE>
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iuc
parents:
diff changeset
983 <TR><TD>Match Rank:</TD><TD>7</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
984 <TR><TD>Score:</TD><TD>0.63</TD</TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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diff changeset
985 <TR><TD>Offset:</TD><TD>-1</TD</TR>
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iuc
parents:
diff changeset
986 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
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iuc
parents:
diff changeset
987 <TR><TD>Alignment:</TD><TD><FONT face="courier">-GTTGCTGCCA---</FONT><BR><FONT face="courier">ATTTACTGACGCNT</FONT></TD></TR></TABLE>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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988 </TD><TD>
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iuc
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989 <svg width="355" height="50">
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1140 </TD></TR></TABLE>
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1141 </TD></TR>
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1142 <TR><TD>
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iuc
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diff changeset
1143 <H4>Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer</H4>
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1144 <TABLE><TR><TD>
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1145 <TABLE>
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iuc
parents:
diff changeset
1146 <TR><TD>Match Rank:</TD><TD>8</TD></TR>
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iuc
parents:
diff changeset
1147 <TR><TD>Score:</TD><TD>0.63</TD</TR>
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diff changeset
1148 <TR><TD>Offset:</TD><TD>0</TD</TR>
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diff changeset
1149 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
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1150 <TR><TD>Alignment:</TD><TD><FONT face="courier">GTTGCTGCCA--</FONT><BR><FONT face="courier">GGTGYTGACAGS</FONT></TD></TR></TABLE>
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1151 </TD><TD>
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1152 <svg width="305" height="50">
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1283 </TD></TR></TABLE>
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1284 </TD></TR>
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1285 <TR><TD>
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iuc
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diff changeset
1286 <H4>Unknown3/Drosophila-Promoters/Homer</H4>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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1287 <TABLE><TR><TD>
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iuc
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diff changeset
1288 <TABLE>
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iuc
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diff changeset
1289 <TR><TD>Match Rank:</TD><TD>9</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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diff changeset
1290 <TR><TD>Score:</TD><TD>0.63</TD</TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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diff changeset
1291 <TR><TD>Offset:</TD><TD>1</TD</TR>
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iuc
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diff changeset
1292 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
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iuc
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diff changeset
1293 <TR><TD>Alignment:</TD><TD><FONT face="courier">GTTGCTGCCA------</FONT><BR><FONT face="courier">-GCGCTGCCAGMTBGT</FONT></TD></TR></TABLE>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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1294 </TD><TD>
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1464 </svg>
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diff changeset
1466 </TD></TR></TABLE>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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1467 </TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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1468 <TR><TD>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
1469 <H4>CRZ1(MacIsaac)/Yeast</H4>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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diff changeset
1470 <TABLE><TR><TD>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
1471 <TABLE>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
1472 <TR><TD>Match Rank:</TD><TD>10</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
1473 <TR><TD>Score:</TD><TD>0.63</TD</TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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diff changeset
1474 <TR><TD>Offset:</TD><TD>0</TD</TR>
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iuc
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diff changeset
1475 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
1476 <TR><TD>Alignment:</TD><TD><FONT face="courier">GTTGCTGCCA</FONT><BR><FONT face="courier">GAGGCTG---</FONT></TD></TR></TABLE>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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1477 </TD><TD>
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1478 <svg width="255" height="50">
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