Information for 2-ATCAAGATGA (Motif 5)

C G T A A C G T A G T C C G T A C G T A A C T G C G T A A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A A C G T A G T C A C G T A C G T A C T G C G T A A C G T
p-value:1e-1
log p-value:-2.907e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif219.8
Percentage of Background Sequences with motif5.48%
Average Position of motif in Targets113.0 +/- 0.0bp
Average Position of motif in Background94.6 +/- 75.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SNRNP70K(RRM)/Drosophila_melanogaster-RNCMPT00143-PBM/HughesRNA

Match Rank:1
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-ATCAAGATGA
GATCAAGA---
A C G T C G T A A C G T A G T C C G T A C G T A A C T G C G T A A C G T A C T G C G T A
C T A G C G T A A C G T A G T C C G T A G C T A A C T G G T C A A C G T A C G T A C G T

MATR3(RRM)/Homo_sapiens-RNCMPT00037-PBM/HughesRNA

Match Rank:2
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:ATCAAGATGA
--CAAGATT-
C G T A A C G T A G T C C G T A C G T A A C T G C G T A A C G T A C T G C G T A
A C G T A C G T A G T C C G T A C G T A A C T G C G T A C G A T A C G T A C G T

SNRNP70(RRM)/Homo_sapiens-RNCMPT00070-PBM/HughesRNA

Match Rank:3
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-ATCAAGATGA
GATCAAG----
A C G T C G T A A C G T A G T C C G T A C G T A A C T G C G T A A C G T A C T G C G T A
C T A G C G T A A C G T A G T C C G T A C G T A C T A G A C G T A C G T A C G T A C G T

At5g05790/MA1196.1/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-ATCAAGATGA----
GATNAAGATAAGGTT
A C G T C G T A A C G T A G T C C G T A C G T A A C T G C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T
C A T G C T G A G C A T C T A G C G T A C T G A A C T G C G T A A C G T T C G A C T G A A C T G T C A G G C A T C G A T

RBM47(RRM)/Gallus_gallus-RNCMPT00279-PBM/HughesRNA

Match Rank:5
Score:0.68
Offset:5
Orientation:forward strand
Alignment:ATCAAGATGA--
-----GATGATN
C G T A A C G T A G T C C G T A C G T A A C T G C G T A A C G T A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C G T A T C G C G T A C G A T C G A T

Rbm47(RRM)/Xenopus_tropicalis-RNCMPT00280-PBM/HughesRNA

Match Rank:6
Score:0.67
Offset:5
Orientation:forward strand
Alignment:ATCAAGATGA--
-----GATGATN
C G T A A C G T A G T C C G T A C G T A A C T G C G T A A C G T A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C G T A T C G C G T A C G A T G A C T

RIN(RRM)/Drosophila_melanogaster-RNCMPT00138-PBM/HughesRNA

Match Rank:7
Score:0.65
Offset:4
Orientation:forward strand
Alignment:ATCAAGATGA--
----AGATGATG
C G T A A C G T A G T C C G T A C G T A A C T G C G T A A C G T A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T A G C G T A A C G T A C T G C T G A G C A T C T A G

ZBTB18/MA0698.1/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-ATCAAGATGA--
CATCCAGATGTTC
A C G T C G T A A C G T A G T C C G T A C G T A A C T G C G T A A C G T A C T G C G T A A C G T A C G T
G T A C C G T A A C G T T G A C G T A C C G T A A T C G G T C A A C G T C T A G G A C T C A G T A G T C

At3g11280/MA1188.1/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:ATCAAGATGA----
ATNAAGATAAGGAT
C G T A A C G T A G T C C G T A C G T A A C T G C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T
C T G A G C A T C A T G C G T A C T G A A C T G T G C A A C G T C T G A C T G A A C T G T C A G G C T A G C A T

onecut/dmmpmm(Noyes_hd)/fly

Match Rank:10
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---ATCAAGATGA
CAAATCAANN---
A C G T A C G T A C G T C G T A A C G T A G T C C G T A C G T A A C T G C G T A A C G T A C T G C G T A
A G T C G C T A C G T A C G T A A C G T A G T C C G T A C T G A A C G T C T A G A C G T A C G T A C G T