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comparison test-data/motif_test1/homerResults/motif1.info.html @ 0:adab852c8216 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
author iuc
date Sun, 08 Aug 2021 11:03:29 +0000
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1 <HTML><HEAD><TITLE>Motif 1</TITLE></HEAD>
2 <H2>Information for 1-ATGAGCTTAATC (Motif 1)</H2>
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67
68 <BR>
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133 <BR>
134 <TABLE border="1" cellpading="0" cellspacing="0">
135 <TR><TD>p-value:</TD><TD>1e-1</TD></TR>
136 <TR><TD>log p-value:</TD><TD>-2.921e+00</TD></TR>
137 <TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR>
138 <TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR>
139 <TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR>
140 <TR><TD>Number of Background Sequences with motif</TD><TD>216.0</TD></TR>
141 <TR><TD>Percentage of Background Sequences with motif</TD><TD>5.39%</TD></TR>
142 <TR><TD>Average Position of motif in Targets</TD><TD>105.0 +/- 0.0bp</TD></TR>
143 <TR><TD>Average Position of motif in Background</TD><TD>97.7 +/- 71.4bp</TD></TR>
144 <TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR>
145 <TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR>
146 <TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif1.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif1RV.motif">reverse opposite</A></TD></TR>
147 <TR><TD>SVG Files for Logos:</TD><TD><A HREF="motif1.logo.svg">forward logo</A><BR/><A HREF="motif1RV.logo.svg">reverse opposite</A></TD></TR>
148 </TABLE>
149 <H3>Matches to Known Motifs</H3>
150 <TABLE border="1" cellpading="0" cellspacing="0">
151 <TR><TD>
152 <H4>Oc/dmmpmm(Noyes_hd)/fly</H4>
153 <TABLE><TR><TD>
154 <TABLE>
155 <TR><TD>Match Rank:</TD><TD>1</TD></TR>
156 <TR><TD>Score:</TD><TD>0.65</TD</TR>
157 <TR><TD>Offset:</TD><TD>4</TD</TR>
158 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
159 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATGAGCTTAATC--</FONT><BR><FONT face="courier">----NNTTAATCCN</FONT></TD></TR></TABLE>
160 </TD><TD>
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313 </TD></TR>
314 <TR><TD>
315 <H4>PHO2(MacIsaac)/Yeast</H4>
316 <TABLE><TR><TD>
317 <TABLE>
318 <TR><TD>Match Rank:</TD><TD>2</TD></TR>
319 <TR><TD>Score:</TD><TD>0.65</TD</TR>
320 <TR><TD>Offset:</TD><TD>5</TD</TR>
321 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
322 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATGAGCTTAATC</FONT><BR><FONT face="courier">-----CTTAAT-</FONT></TD></TR></TABLE>
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456 </TD></TR>
457 <TR><TD>
458 <H4>oc/dmmpmm(Noyes)/fly</H4>
459 <TABLE><TR><TD>
460 <TABLE>
461 <TR><TD>Match Rank:</TD><TD>3</TD></TR>
462 <TR><TD>Score:</TD><TD>0.65</TD</TR>
463 <TR><TD>Offset:</TD><TD>6</TD</TR>
464 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
465 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATGAGCTTAATC-</FONT><BR><FONT face="courier">------TTAATCC</FONT></TD></TR></TABLE>
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609 </TD></TR>
610 <TR><TD>
611 <H4>Gsc/dmmpmm(Noyes_hd)/fly</H4>
612 <TABLE><TR><TD>
613 <TABLE>
614 <TR><TD>Match Rank:</TD><TD>4</TD></TR>
615 <TR><TD>Score:</TD><TD>0.64</TD</TR>
616 <TR><TD>Offset:</TD><TD>4</TD</TR>
617 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
618 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATGAGCTTAATC--</FONT><BR><FONT face="courier">----NNTTAATCCN</FONT></TD></TR></TABLE>
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772 </TD></TR>
773 <TR><TD>
774 <H4>bcd/dmmpmm(Noyes_hd)/fly</H4>
775 <TABLE><TR><TD>
776 <TABLE>
777 <TR><TD>Match Rank:</TD><TD>5</TD></TR>
778 <TR><TD>Score:</TD><TD>0.64</TD</TR>
779 <TR><TD>Offset:</TD><TD>4</TD</TR>
780 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
781 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATGAGCTTAATC--</FONT><BR><FONT face="courier">----GGTTAATCCN</FONT></TD></TR></TABLE>
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935 </TD></TR>
936 <TR><TD>
937 <H4>OTX2/MA0712.1/Jaspar</H4>
938 <TABLE><TR><TD>
939 <TABLE>
940 <TR><TD>Match Rank:</TD><TD>6</TD></TR>
941 <TR><TD>Score:</TD><TD>0.64</TD</TR>
942 <TR><TD>Offset:</TD><TD>6</TD</TR>
943 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
944 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATGAGCTTAATC--</FONT><BR><FONT face="courier">------TTAATCCT</FONT></TD></TR></TABLE>
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1098 </TD></TR>
1099 <TR><TD>
1100 <H4>OTX1/MA0711.1/Jaspar</H4>
1101 <TABLE><TR><TD>
1102 <TABLE>
1103 <TR><TD>Match Rank:</TD><TD>7</TD></TR>
1104 <TR><TD>Score:</TD><TD>0.63</TD</TR>
1105 <TR><TD>Offset:</TD><TD>6</TD</TR>
1106 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
1107 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATGAGCTTAATC--</FONT><BR><FONT face="courier">------TTAATCCG</FONT></TD></TR></TABLE>
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1261 </TD></TR>
1262 <TR><TD>
1263 <H4>ESRRB/MA0141.3/Jaspar</H4>
1264 <TABLE><TR><TD>
1265 <TABLE>
1266 <TR><TD>Match Rank:</TD><TD>8</TD></TR>
1267 <TR><TD>Score:</TD><TD>0.63</TD</TR>
1268 <TR><TD>Offset:</TD><TD>-1</TD</TR>
1269 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
1270 <TR><TD>Alignment:</TD><TD><FONT face="courier">-ATGAGCTTAATC</FONT><BR><FONT face="courier">NATGACCTTGA--</FONT></TD></TR></TABLE>
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1414 </TD></TR>
1415 <TR><TD>
1416 <H4>GSC2/MA0891.1/Jaspar</H4>
1417 <TABLE><TR><TD>
1418 <TABLE>
1419 <TR><TD>Match Rank:</TD><TD>9</TD></TR>
1420 <TR><TD>Score:</TD><TD>0.63</TD</TR>
1421 <TR><TD>Offset:</TD><TD>5</TD</TR>
1422 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
1423 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATGAGCTTAATC---</FONT><BR><FONT face="courier">-----CCTAATCCGC</FONT></TD></TR></TABLE>
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1586 </TD></TR></TABLE>
1587 </TD></TR>
1588 <TR><TD>
1589 <H4>Pitx1/MA0682.1/Jaspar</H4>
1590 <TABLE><TR><TD>
1591 <TABLE>
1592 <TR><TD>Match Rank:</TD><TD>10</TD></TR>
1593 <TR><TD>Score:</TD><TD>0.63</TD</TR>
1594 <TR><TD>Offset:</TD><TD>6</TD</TR>
1595 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
1596 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATGAGCTTAATC--</FONT><BR><FONT face="courier">------TTAATCCC</FONT></TD></TR></TABLE>
1597 </TD><TD>
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