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comparison test-data/motif_test1/homerResults/motif6.info.html @ 0:adab852c8216 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
author iuc
date Sun, 08 Aug 2021 11:03:29 +0000
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-1:000000000000 0:adab852c8216
1 <HTML><HEAD><TITLE>Motif 6</TITLE></HEAD>
2 <H2>Information for 3-GTTGCTGCCA (Motif 6)</H2>
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55 </g>
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57
58 <BR>
59 Reverse Opposite:<BR/><svg width="255" height="50">
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112 </svg>
113 <BR>
114 <TABLE border="1" cellpading="0" cellspacing="0">
115 <TR><TD>p-value:</TD><TD>1e-1</TD></TR>
116 <TR><TD>log p-value:</TD><TD>-2.907e+00</TD></TR>
117 <TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR>
118 <TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR>
119 <TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR>
120 <TR><TD>Number of Background Sequences with motif</TD><TD>219.9</TD></TR>
121 <TR><TD>Percentage of Background Sequences with motif</TD><TD>5.49%</TD></TR>
122 <TR><TD>Average Position of motif in Targets</TD><TD>140.0 +/- 0.0bp</TD></TR>
123 <TR><TD>Average Position of motif in Background</TD><TD>103.4 +/- 83.3bp</TD></TR>
124 <TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR>
125 <TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR>
126 <TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif6.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif6RV.motif">reverse opposite</A></TD></TR>
127 <TR><TD>SVG Files for Logos:</TD><TD><A HREF="motif6.logo.svg">forward logo</A><BR/><A HREF="motif6RV.logo.svg">reverse opposite</A></TD></TR>
128 </TABLE>
129 <H3>Matches to Known Motifs</H3>
130 <TABLE border="1" cellpading="0" cellspacing="0">
131 <TR><TD>
132 <H4>DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer</H4>
133 <TABLE><TR><TD>
134 <TABLE>
135 <TR><TD>Match Rank:</TD><TD>1</TD></TR>
136 <TR><TD>Score:</TD><TD>0.66</TD</TR>
137 <TR><TD>Offset:</TD><TD>1</TD</TR>
138 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
139 <TR><TD>Alignment:</TD><TD><FONT face="courier">GTTGCTGCCA-</FONT><BR><FONT face="courier">-TTCCCGCCAA</FONT></TD></TR></TABLE>
140 </TD><TD>
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263 </TD></TR>
264 <TR><TD>
265 <H4>NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer</H4>
266 <TABLE><TR><TD>
267 <TABLE>
268 <TR><TD>Match Rank:</TD><TD>2</TD></TR>
269 <TR><TD>Score:</TD><TD>0.65</TD</TR>
270 <TR><TD>Offset:</TD><TD>4</TD</TR>
271 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
272 <TR><TD>Alignment:</TD><TD><FONT face="courier">GTTGCTGCCA--</FONT><BR><FONT face="courier">----TTGCCAAG</FONT></TD></TR></TABLE>
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406 </TD></TR>
407 <TR><TD>
408 <H4>HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer</H4>
409 <TABLE><TR><TD>
410 <TABLE>
411 <TR><TD>Match Rank:</TD><TD>3</TD></TR>
412 <TR><TD>Score:</TD><TD>0.65</TD</TR>
413 <TR><TD>Offset:</TD><TD>2</TD</TR>
414 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
415 <TR><TD>Alignment:</TD><TD><FONT face="courier">GTTGCTGCCA</FONT><BR><FONT face="courier">--VGCTGGCA</FONT></TD></TR></TABLE>
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529 </TD></TR>
530 <TR><TD>
531 <H4>PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer</H4>
532 <TABLE><TR><TD>
533 <TABLE>
534 <TR><TD>Match Rank:</TD><TD>4</TD></TR>
535 <TR><TD>Score:</TD><TD>0.65</TD</TR>
536 <TR><TD>Offset:</TD><TD>-4</TD</TR>
537 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
538 <TR><TD>Alignment:</TD><TD><FONT face="courier">----GTTGCTGCCA-</FONT><BR><FONT face="courier">AGATGCTRCTRCCHT</FONT></TD></TR></TABLE>
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702 </TD></TR>
703 <TR><TD>
704 <H4>NFIX/MA0671.1/Jaspar</H4>
705 <TABLE><TR><TD>
706 <TABLE>
707 <TR><TD>Match Rank:</TD><TD>5</TD></TR>
708 <TR><TD>Score:</TD><TD>0.64</TD</TR>
709 <TR><TD>Offset:</TD><TD>3</TD</TR>
710 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
711 <TR><TD>Alignment:</TD><TD><FONT face="courier">GTTGCTGCCA--</FONT><BR><FONT face="courier">---CGTGCCAAG</FONT></TD></TR></TABLE>
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845 </TD></TR>
846 <TR><TD>
847 <H4>Aef1/dmmpmm(Pollard)/fly</H4>
848 <TABLE><TR><TD>
849 <TABLE>
850 <TR><TD>Match Rank:</TD><TD>6</TD></TR>
851 <TR><TD>Score:</TD><TD>0.63</TD</TR>
852 <TR><TD>Offset:</TD><TD>-1</TD</TR>
853 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
854 <TR><TD>Alignment:</TD><TD><FONT face="courier">-GTTGCTGCCA</FONT><BR><FONT face="courier">TGTTGTTG---</FONT></TD></TR></TABLE>
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978 </TD></TR>
979 <TR><TD>
980 <H4>SUM1(MacIsaac)/Yeast</H4>
981 <TABLE><TR><TD>
982 <TABLE>
983 <TR><TD>Match Rank:</TD><TD>7</TD></TR>
984 <TR><TD>Score:</TD><TD>0.63</TD</TR>
985 <TR><TD>Offset:</TD><TD>-1</TD</TR>
986 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
987 <TR><TD>Alignment:</TD><TD><FONT face="courier">-GTTGCTGCCA---</FONT><BR><FONT face="courier">ATTTACTGACGCNT</FONT></TD></TR></TABLE>
988 </TD><TD>
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1141 </TD></TR>
1142 <TR><TD>
1143 <H4>Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer</H4>
1144 <TABLE><TR><TD>
1145 <TABLE>
1146 <TR><TD>Match Rank:</TD><TD>8</TD></TR>
1147 <TR><TD>Score:</TD><TD>0.63</TD</TR>
1148 <TR><TD>Offset:</TD><TD>0</TD</TR>
1149 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
1150 <TR><TD>Alignment:</TD><TD><FONT face="courier">GTTGCTGCCA--</FONT><BR><FONT face="courier">GGTGYTGACAGS</FONT></TD></TR></TABLE>
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1284 </TD></TR>
1285 <TR><TD>
1286 <H4>Unknown3/Drosophila-Promoters/Homer</H4>
1287 <TABLE><TR><TD>
1288 <TABLE>
1289 <TR><TD>Match Rank:</TD><TD>9</TD></TR>
1290 <TR><TD>Score:</TD><TD>0.63</TD</TR>
1291 <TR><TD>Offset:</TD><TD>1</TD</TR>
1292 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
1293 <TR><TD>Alignment:</TD><TD><FONT face="courier">GTTGCTGCCA------</FONT><BR><FONT face="courier">-GCGCTGCCAGMTBGT</FONT></TD></TR></TABLE>
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1468 <TR><TD>
1469 <H4>CRZ1(MacIsaac)/Yeast</H4>
1470 <TABLE><TR><TD>
1471 <TABLE>
1472 <TR><TD>Match Rank:</TD><TD>10</TD></TR>
1473 <TR><TD>Score:</TD><TD>0.63</TD</TR>
1474 <TR><TD>Offset:</TD><TD>0</TD</TR>
1475 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
1476 <TR><TD>Alignment:</TD><TD><FONT face="courier">GTTGCTGCCA</FONT><BR><FONT face="courier">GAGGCTG---</FONT></TD></TR></TABLE>
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