diff test-data/small.gtf @ 0:adab852c8216 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
author iuc
date Sun, 08 Aug 2021 11:03:29 +0000
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/small.gtf	Sun Aug 08 11:03:29 2021 +0000
@@ -0,0 +1,221 @@
+#!genome-build GRCm38.p6
+#!genome-version GRCm38
+#!genome-date 2012-01
+#!genome-build-accession NCBI:GCA_000001635.8
+#!genebuild-last-updated 2020-02
+chr2	ensembl_havana	gene	74668310	74671599	.	+	.	gene_id "ENSMUSG00000001819"; gene_version "4"; gene_name "Hoxd13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000013304"; havana_gene_version "2";
+chr2	ensembl_havana	transcript	74668310	74671599	.	+	.	gene_id "ENSMUSG00000001819"; gene_version "4"; transcript_id "ENSMUST00000001872"; transcript_version "4"; gene_name "Hoxd13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000013304"; havana_gene_version "2"; transcript_name "Hoxd13-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16139"; havana_transcript "OTTMUST00000032142"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	exon	74668310	74669078	.	+	.	gene_id "ENSMUSG00000001819"; gene_version "4"; transcript_id "ENSMUST00000001872"; transcript_version "4"; exon_number "1"; gene_name "Hoxd13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000013304"; havana_gene_version "2"; transcript_name "Hoxd13-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16139"; havana_transcript "OTTMUST00000032142"; havana_transcript_version "2"; exon_id "ENSMUSE00000336629"; exon_version "2"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	CDS	74668310	74669078	.	+	0	gene_id "ENSMUSG00000001819"; gene_version "4"; transcript_id "ENSMUST00000001872"; transcript_version "4"; exon_number "1"; gene_name "Hoxd13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000013304"; havana_gene_version "2"; transcript_name "Hoxd13-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16139"; havana_transcript "OTTMUST00000032142"; havana_transcript_version "2"; protein_id "ENSMUSP00000001872"; protein_version "4"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	start_codon	74668310	74668312	.	+	0	gene_id "ENSMUSG00000001819"; gene_version "4"; transcript_id "ENSMUST00000001872"; transcript_version "4"; exon_number "1"; gene_name "Hoxd13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000013304"; havana_gene_version "2"; transcript_name "Hoxd13-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16139"; havana_transcript "OTTMUST00000032142"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	exon	74669886	74671599	.	+	.	gene_id "ENSMUSG00000001819"; gene_version "4"; transcript_id "ENSMUST00000001872"; transcript_version "4"; exon_number "2"; gene_name "Hoxd13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000013304"; havana_gene_version "2"; transcript_name "Hoxd13-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16139"; havana_transcript "OTTMUST00000032142"; havana_transcript_version "2"; exon_id "ENSMUSE00000601614"; exon_version "3"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	CDS	74669886	74670133	.	+	2	gene_id "ENSMUSG00000001819"; gene_version "4"; transcript_id "ENSMUST00000001872"; transcript_version "4"; exon_number "2"; gene_name "Hoxd13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000013304"; havana_gene_version "2"; transcript_name "Hoxd13-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16139"; havana_transcript "OTTMUST00000032142"; havana_transcript_version "2"; protein_id "ENSMUSP00000001872"; protein_version "4"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	stop_codon	74670134	74670136	.	+	0	gene_id "ENSMUSG00000001819"; gene_version "4"; transcript_id "ENSMUST00000001872"; transcript_version "4"; exon_number "2"; gene_name "Hoxd13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000013304"; havana_gene_version "2"; transcript_name "Hoxd13-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16139"; havana_transcript "OTTMUST00000032142"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	three_prime_utr	74670137	74671599	.	+	.	gene_id "ENSMUSG00000001819"; gene_version "4"; transcript_id "ENSMUST00000001872"; transcript_version "4"; gene_name "Hoxd13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000013304"; havana_gene_version "2"; transcript_name "Hoxd13-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16139"; havana_transcript "OTTMUST00000032142"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	gene	74675013	74677705	.	+	.	gene_id "ENSMUSG00000001823"; gene_version "5"; gene_name "Hoxd12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016555"; havana_gene_version "3";
+chr2	ensembl_havana	transcript	74675013	74677705	.	+	.	gene_id "ENSMUSG00000001823"; gene_version "5"; transcript_id "ENSMUST00000001878"; transcript_version "5"; gene_name "Hoxd12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016555"; havana_gene_version "3"; transcript_name "Hoxd12-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38147"; havana_transcript "OTTMUST00000040008"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	exon	74675013	74675654	.	+	.	gene_id "ENSMUSG00000001823"; gene_version "5"; transcript_id "ENSMUST00000001878"; transcript_version "5"; exon_number "1"; gene_name "Hoxd12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016555"; havana_gene_version "3"; transcript_name "Hoxd12-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38147"; havana_transcript "OTTMUST00000040008"; havana_transcript_version "3"; exon_id "ENSMUSE00000166083"; exon_version "5"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	CDS	74675087	74675654	.	+	0	gene_id "ENSMUSG00000001823"; gene_version "5"; transcript_id "ENSMUST00000001878"; transcript_version "5"; exon_number "1"; gene_name "Hoxd12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016555"; havana_gene_version "3"; transcript_name "Hoxd12-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38147"; havana_transcript "OTTMUST00000040008"; havana_transcript_version "3"; protein_id "ENSMUSP00000001878"; protein_version "4"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	start_codon	74675087	74675089	.	+	0	gene_id "ENSMUSG00000001823"; gene_version "5"; transcript_id "ENSMUST00000001878"; transcript_version "5"; exon_number "1"; gene_name "Hoxd12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016555"; havana_gene_version "3"; transcript_name "Hoxd12-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38147"; havana_transcript "OTTMUST00000040008"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	exon	74675814	74677705	.	+	.	gene_id "ENSMUSG00000001823"; gene_version "5"; transcript_id "ENSMUST00000001878"; transcript_version "5"; exon_number "2"; gene_name "Hoxd12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016555"; havana_gene_version "3"; transcript_name "Hoxd12-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38147"; havana_transcript "OTTMUST00000040008"; havana_transcript_version "3"; exon_id "ENSMUSE00000359408"; exon_version "4"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	CDS	74675814	74676049	.	+	2	gene_id "ENSMUSG00000001823"; gene_version "5"; transcript_id "ENSMUST00000001878"; transcript_version "5"; exon_number "2"; gene_name "Hoxd12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016555"; havana_gene_version "3"; transcript_name "Hoxd12-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38147"; havana_transcript "OTTMUST00000040008"; havana_transcript_version "3"; protein_id "ENSMUSP00000001878"; protein_version "4"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	stop_codon	74676050	74676052	.	+	0	gene_id "ENSMUSG00000001823"; gene_version "5"; transcript_id "ENSMUST00000001878"; transcript_version "5"; exon_number "2"; gene_name "Hoxd12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016555"; havana_gene_version "3"; transcript_name "Hoxd12-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38147"; havana_transcript "OTTMUST00000040008"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	five_prime_utr	74675013	74675086	.	+	.	gene_id "ENSMUSG00000001823"; gene_version "5"; transcript_id "ENSMUST00000001878"; transcript_version "5"; gene_name "Hoxd12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016555"; havana_gene_version "3"; transcript_name "Hoxd12-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38147"; havana_transcript "OTTMUST00000040008"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	three_prime_utr	74676053	74677705	.	+	.	gene_id "ENSMUSG00000001823"; gene_version "5"; transcript_id "ENSMUST00000001878"; transcript_version "5"; gene_name "Hoxd12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016555"; havana_gene_version "3"; transcript_name "Hoxd12-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38147"; havana_transcript "OTTMUST00000040008"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	gene	74679557	74687016	.	+	.	gene_id "ENSMUSG00000042499"; gene_version "13"; gene_name "Hoxd11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016551"; havana_gene_version "6";
+chr2	havana	transcript	74679557	74687016	.	+	.	gene_id "ENSMUSG00000042499"; gene_version "13"; transcript_id "ENSMUST00000048086"; transcript_version "8"; gene_name "Hoxd11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016551"; havana_gene_version "6"; transcript_name "Hoxd11-201"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000040002"; havana_transcript_version "5"; transcript_support_level "1";
+chr2	havana	exon	74679557	74679809	.	+	.	gene_id "ENSMUSG00000042499"; gene_version "13"; transcript_id "ENSMUST00000048086"; transcript_version "8"; exon_number "1"; gene_name "Hoxd11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016551"; havana_gene_version "6"; transcript_name "Hoxd11-201"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000040002"; havana_transcript_version "5"; exon_id "ENSMUSE00000843165"; exon_version "3"; transcript_support_level "1";
+chr2	havana	exon	74683903	74687016	.	+	.	gene_id "ENSMUSG00000042499"; gene_version "13"; transcript_id "ENSMUST00000048086"; transcript_version "8"; exon_number "2"; gene_name "Hoxd11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016551"; havana_gene_version "6"; transcript_name "Hoxd11-201"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000040002"; havana_transcript_version "5"; exon_id "ENSMUSE00000330347"; exon_version "4"; transcript_support_level "1";
+chr2	ensembl_havana	transcript	74682323	74684168	.	+	.	gene_id "ENSMUSG00000042499"; gene_version "13"; transcript_id "ENSMUST00000142312"; transcript_version "2"; gene_name "Hoxd11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016551"; havana_gene_version "6"; transcript_name "Hoxd11-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16140"; havana_transcript "OTTMUST00000040001"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	exon	74682323	74683167	.	+	.	gene_id "ENSMUSG00000042499"; gene_version "13"; transcript_id "ENSMUST00000142312"; transcript_version "2"; exon_number "1"; gene_name "Hoxd11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016551"; havana_gene_version "6"; transcript_name "Hoxd11-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16140"; havana_transcript "OTTMUST00000040001"; havana_transcript_version "2"; exon_id "ENSMUSE00000404559"; exon_version "8"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	CDS	74682393	74683167	.	+	0	gene_id "ENSMUSG00000042499"; gene_version "13"; transcript_id "ENSMUST00000142312"; transcript_version "2"; exon_number "1"; gene_name "Hoxd11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016551"; havana_gene_version "6"; transcript_name "Hoxd11-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16140"; havana_transcript "OTTMUST00000040001"; havana_transcript_version "2"; protein_id "ENSMUSP00000122582"; protein_version "1"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	start_codon	74682393	74682395	.	+	0	gene_id "ENSMUSG00000042499"; gene_version "13"; transcript_id "ENSMUST00000142312"; transcript_version "2"; exon_number "1"; gene_name "Hoxd11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016551"; havana_gene_version "6"; transcript_name "Hoxd11-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16140"; havana_transcript "OTTMUST00000040001"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	exon	74683903	74684168	.	+	.	gene_id "ENSMUSG00000042499"; gene_version "13"; transcript_id "ENSMUST00000142312"; transcript_version "2"; exon_number "2"; gene_name "Hoxd11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016551"; havana_gene_version "6"; transcript_name "Hoxd11-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16140"; havana_transcript "OTTMUST00000040001"; havana_transcript_version "2"; exon_id "ENSMUSE00000746167"; exon_version "2"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	CDS	74683903	74684135	.	+	2	gene_id "ENSMUSG00000042499"; gene_version "13"; transcript_id "ENSMUST00000142312"; transcript_version "2"; exon_number "2"; gene_name "Hoxd11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016551"; havana_gene_version "6"; transcript_name "Hoxd11-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16140"; havana_transcript "OTTMUST00000040001"; havana_transcript_version "2"; protein_id "ENSMUSP00000122582"; protein_version "1"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	stop_codon	74684136	74684138	.	+	0	gene_id "ENSMUSG00000042499"; gene_version "13"; transcript_id "ENSMUST00000142312"; transcript_version "2"; exon_number "2"; gene_name "Hoxd11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016551"; havana_gene_version "6"; transcript_name "Hoxd11-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16140"; havana_transcript "OTTMUST00000040001"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	five_prime_utr	74682323	74682392	.	+	.	gene_id "ENSMUSG00000042499"; gene_version "13"; transcript_id "ENSMUST00000142312"; transcript_version "2"; gene_name "Hoxd11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016551"; havana_gene_version "6"; transcript_name "Hoxd11-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16140"; havana_transcript "OTTMUST00000040001"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	three_prime_utr	74684139	74684168	.	+	.	gene_id "ENSMUSG00000042499"; gene_version "13"; transcript_id "ENSMUST00000142312"; transcript_version "2"; gene_name "Hoxd11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016551"; havana_gene_version "6"; transcript_name "Hoxd11-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16140"; havana_transcript "OTTMUST00000040001"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
+chr2	havana	gene	74683446	74694194	.	+	.	gene_id "ENSMUSG00000099521"; gene_version "1"; gene_name "Gm28309"; gene_source "havana"; gene_biotype "processed_transcript"; havana_gene "OTTMUSG00000049460"; havana_gene_version "1";
+chr2	havana	transcript	74683446	74694194	.	+	.	gene_id "ENSMUSG00000099521"; gene_version "1"; transcript_id "ENSMUST00000136302"; transcript_version "2"; gene_name "Gm28309"; gene_source "havana"; gene_biotype "processed_transcript"; havana_gene "OTTMUSG00000049460"; havana_gene_version "1"; transcript_name "Gm28309-201"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000126087"; havana_transcript_version "1"; tag "basic"; transcript_support_level "5";
+chr2	havana	exon	74683446	74683509	.	+	.	gene_id "ENSMUSG00000099521"; gene_version "1"; transcript_id "ENSMUST00000136302"; transcript_version "2"; exon_number "1"; gene_name "Gm28309"; gene_source "havana"; gene_biotype "processed_transcript"; havana_gene "OTTMUSG00000049460"; havana_gene_version "1"; transcript_name "Gm28309-201"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000126087"; havana_transcript_version "1"; exon_id "ENSMUSE00000731883"; exon_version "1"; tag "basic"; transcript_support_level "5";
+chr2	havana	exon	74683903	74684357	.	+	.	gene_id "ENSMUSG00000099521"; gene_version "1"; transcript_id "ENSMUST00000136302"; transcript_version "2"; exon_number "2"; gene_name "Gm28309"; gene_source "havana"; gene_biotype "processed_transcript"; havana_gene "OTTMUSG00000049460"; havana_gene_version "1"; transcript_name "Gm28309-201"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000126087"; havana_transcript_version "1"; exon_id "ENSMUSE00000774488"; exon_version "1"; tag "basic"; transcript_support_level "5";
+chr2	havana	exon	74694091	74694194	.	+	.	gene_id "ENSMUSG00000099521"; gene_version "1"; transcript_id "ENSMUST00000136302"; transcript_version "2"; exon_number "3"; gene_name "Gm28309"; gene_source "havana"; gene_biotype "processed_transcript"; havana_gene "OTTMUSG00000049460"; havana_gene_version "1"; transcript_name "Gm28309-201"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000126087"; havana_transcript_version "1"; exon_id "ENSMUSE00000858519"; exon_version "1"; tag "basic"; transcript_support_level "5";
+chr2	ensembl_havana	gene	74691924	74695105	.	+	.	gene_id "ENSMUSG00000050368"; gene_version "4"; gene_name "Hoxd10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016554"; havana_gene_version "3";
+chr2	ensembl_havana	transcript	74691924	74695105	.	+	.	gene_id "ENSMUSG00000050368"; gene_version "4"; transcript_id "ENSMUST00000061745"; transcript_version "4"; gene_name "Hoxd10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016554"; havana_gene_version "3"; transcript_name "Hoxd10-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16141"; havana_transcript "OTTMUST00000040007"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	exon	74691924	74692724	.	+	.	gene_id "ENSMUSG00000050368"; gene_version "4"; transcript_id "ENSMUST00000061745"; transcript_version "4"; exon_number "1"; gene_name "Hoxd10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016554"; havana_gene_version "3"; transcript_name "Hoxd10-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16141"; havana_transcript "OTTMUST00000040007"; havana_transcript_version "3"; exon_id "ENSMUSE00000341264"; exon_version "4"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	CDS	74691980	74692724	.	+	0	gene_id "ENSMUSG00000050368"; gene_version "4"; transcript_id "ENSMUST00000061745"; transcript_version "4"; exon_number "1"; gene_name "Hoxd10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016554"; havana_gene_version "3"; transcript_name "Hoxd10-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16141"; havana_transcript "OTTMUST00000040007"; havana_transcript_version "3"; protein_id "ENSMUSP00000062412"; protein_version "3"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	start_codon	74691980	74691982	.	+	0	gene_id "ENSMUSG00000050368"; gene_version "4"; transcript_id "ENSMUST00000061745"; transcript_version "4"; exon_number "1"; gene_name "Hoxd10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016554"; havana_gene_version "3"; transcript_name "Hoxd10-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16141"; havana_transcript "OTTMUST00000040007"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	exon	74694091	74695105	.	+	.	gene_id "ENSMUSG00000050368"; gene_version "4"; transcript_id "ENSMUST00000061745"; transcript_version "4"; exon_number "2"; gene_name "Hoxd10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016554"; havana_gene_version "3"; transcript_name "Hoxd10-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16141"; havana_transcript "OTTMUST00000040007"; havana_transcript_version "3"; exon_id "ENSMUSE00000343683"; exon_version "3"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	CDS	74694091	74694365	.	+	2	gene_id "ENSMUSG00000050368"; gene_version "4"; transcript_id "ENSMUST00000061745"; transcript_version "4"; exon_number "2"; gene_name "Hoxd10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016554"; havana_gene_version "3"; transcript_name "Hoxd10-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16141"; havana_transcript "OTTMUST00000040007"; havana_transcript_version "3"; protein_id "ENSMUSP00000062412"; protein_version "3"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	stop_codon	74694366	74694368	.	+	0	gene_id "ENSMUSG00000050368"; gene_version "4"; transcript_id "ENSMUST00000061745"; transcript_version "4"; exon_number "2"; gene_name "Hoxd10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016554"; havana_gene_version "3"; transcript_name "Hoxd10-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16141"; havana_transcript "OTTMUST00000040007"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	five_prime_utr	74691924	74691979	.	+	.	gene_id "ENSMUSG00000050368"; gene_version "4"; transcript_id "ENSMUST00000061745"; transcript_version "4"; gene_name "Hoxd10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016554"; havana_gene_version "3"; transcript_name "Hoxd10-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16141"; havana_transcript "OTTMUST00000040007"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	three_prime_utr	74694369	74695105	.	+	.	gene_id "ENSMUSG00000050368"; gene_version "4"; transcript_id "ENSMUST00000061745"; transcript_version "4"; gene_name "Hoxd10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016554"; havana_gene_version "3"; transcript_name "Hoxd10-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16141"; havana_transcript "OTTMUST00000040007"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
+chr2	havana	gene	74695520	74697365	.	+	.	gene_id "ENSMUSG00000086077"; gene_version "7"; gene_name "Gm14396"; gene_source "havana"; gene_biotype "lincRNA"; havana_gene "OTTMUSG00000037522"; havana_gene_version "2";
+chr2	havana	transcript	74695520	74697365	.	+	.	gene_id "ENSMUSG00000086077"; gene_version "7"; transcript_id "ENSMUST00000126966"; transcript_version "7"; gene_name "Gm14396"; gene_source "havana"; gene_biotype "lincRNA"; havana_gene "OTTMUSG00000037522"; havana_gene_version "2"; transcript_name "Gm14396-201"; transcript_source "havana"; transcript_biotype "lincRNA"; havana_transcript "OTTMUST00000040005"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
+chr2	havana	exon	74695520	74695732	.	+	.	gene_id "ENSMUSG00000086077"; gene_version "7"; transcript_id "ENSMUST00000126966"; transcript_version "7"; exon_number "1"; gene_name "Gm14396"; gene_source "havana"; gene_biotype "lincRNA"; havana_gene "OTTMUSG00000037522"; havana_gene_version "2"; transcript_name "Gm14396-201"; transcript_source "havana"; transcript_biotype "lincRNA"; havana_transcript "OTTMUST00000040005"; havana_transcript_version "3"; exon_id "ENSMUSE00000756210"; exon_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	exon	74697031	74697365	.	+	.	gene_id "ENSMUSG00000086077"; gene_version "7"; transcript_id "ENSMUST00000126966"; transcript_version "7"; exon_number "2"; gene_name "Gm14396"; gene_source "havana"; gene_biotype "lincRNA"; havana_gene "OTTMUSG00000037522"; havana_gene_version "2"; transcript_name "Gm14396-201"; transcript_source "havana"; transcript_biotype "lincRNA"; havana_transcript "OTTMUST00000040005"; havana_transcript_version "3"; exon_id "ENSMUSE00000777033"; exon_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	transcript	74695601	74697365	.	+	.	gene_id "ENSMUSG00000086077"; gene_version "7"; transcript_id "ENSMUST00000152027"; transcript_version "2"; gene_name "Gm14396"; gene_source "havana"; gene_biotype "lincRNA"; havana_gene "OTTMUSG00000037522"; havana_gene_version "2"; transcript_name "Gm14396-202"; transcript_source "havana"; transcript_biotype "lincRNA"; havana_transcript "OTTMUST00000040006"; havana_transcript_version "3"; transcript_support_level "2";
+chr2	havana	exon	74695601	74695727	.	+	.	gene_id "ENSMUSG00000086077"; gene_version "7"; transcript_id "ENSMUST00000152027"; transcript_version "2"; exon_number "1"; gene_name "Gm14396"; gene_source "havana"; gene_biotype "lincRNA"; havana_gene "OTTMUSG00000037522"; havana_gene_version "2"; transcript_name "Gm14396-202"; transcript_source "havana"; transcript_biotype "lincRNA"; havana_transcript "OTTMUST00000040006"; havana_transcript_version "3"; exon_id "ENSMUSE00000772112"; exon_version "1"; transcript_support_level "2";
+chr2	havana	exon	74697031	74697365	.	+	.	gene_id "ENSMUSG00000086077"; gene_version "7"; transcript_id "ENSMUST00000152027"; transcript_version "2"; exon_number "2"; gene_name "Gm14396"; gene_source "havana"; gene_biotype "lincRNA"; havana_gene "OTTMUSG00000037522"; havana_gene_version "2"; transcript_name "Gm14396-202"; transcript_source "havana"; transcript_biotype "lincRNA"; havana_transcript "OTTMUST00000040006"; havana_transcript_version "3"; exon_id "ENSMUSE00000777033"; exon_version "1"; transcript_support_level "2";
+chr2	havana	gene	74696768	74697586	.	-	.	gene_id "ENSMUSG00000100209"; gene_version "1"; gene_name "Gm28793"; gene_source "havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000045856"; havana_gene_version "1";
+chr2	havana	transcript	74696768	74697586	.	-	.	gene_id "ENSMUSG00000100209"; gene_version "1"; transcript_id "ENSMUST00000190845"; transcript_version "1"; gene_name "Gm28793"; gene_source "havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000045856"; havana_gene_version "1"; transcript_name "Gm28793-201"; transcript_source "havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000119840"; havana_transcript_version "1"; tag "basic"; transcript_support_level "5";
+chr2	havana	exon	74697248	74697586	.	-	.	gene_id "ENSMUSG00000100209"; gene_version "1"; transcript_id "ENSMUST00000190845"; transcript_version "1"; exon_number "1"; gene_name "Gm28793"; gene_source "havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000045856"; havana_gene_version "1"; transcript_name "Gm28793-201"; transcript_source "havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000119840"; havana_transcript_version "1"; exon_id "ENSMUSE00001327914"; exon_version "1"; tag "basic"; transcript_support_level "5";
+chr2	havana	exon	74696768	74696841	.	-	.	gene_id "ENSMUSG00000100209"; gene_version "1"; transcript_id "ENSMUST00000190845"; transcript_version "1"; exon_number "2"; gene_name "Gm28793"; gene_source "havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000045856"; havana_gene_version "1"; transcript_name "Gm28793-201"; transcript_source "havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000119840"; havana_transcript_version "1"; exon_id "ENSMUSE00001329539"; exon_version "1"; tag "basic"; transcript_support_level "5";
+chr2	ensembl_havana	gene	74697727	74700208	.	+	.	gene_id "ENSMUSG00000043342"; gene_version "9"; gene_name "Hoxd9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016552"; havana_gene_version "4";
+chr2	ensembl_havana	transcript	74697727	74700208	.	+	.	gene_id "ENSMUSG00000043342"; gene_version "9"; transcript_id "ENSMUST00000059272"; transcript_version "9"; gene_name "Hoxd9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016552"; havana_gene_version "4"; transcript_name "Hoxd9-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16142"; havana_transcript "OTTMUST00000040004"; havana_transcript_version "4"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	exon	74697727	74698833	.	+	.	gene_id "ENSMUSG00000043342"; gene_version "9"; transcript_id "ENSMUST00000059272"; transcript_version "9"; exon_number "1"; gene_name "Hoxd9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016552"; havana_gene_version "4"; transcript_name "Hoxd9-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16142"; havana_transcript "OTTMUST00000040004"; havana_transcript_version "4"; exon_id "ENSMUSE00000385196"; exon_version "4"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	CDS	74698056	74698833	.	+	0	gene_id "ENSMUSG00000043342"; gene_version "9"; transcript_id "ENSMUST00000059272"; transcript_version "9"; exon_number "1"; gene_name "Hoxd9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016552"; havana_gene_version "4"; transcript_name "Hoxd9-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16142"; havana_transcript "OTTMUST00000040004"; havana_transcript_version "4"; protein_id "ENSMUSP00000058490"; protein_version "8"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	start_codon	74698056	74698058	.	+	0	gene_id "ENSMUSG00000043342"; gene_version "9"; transcript_id "ENSMUST00000059272"; transcript_version "9"; exon_number "1"; gene_name "Hoxd9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016552"; havana_gene_version "4"; transcript_name "Hoxd9-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16142"; havana_transcript "OTTMUST00000040004"; havana_transcript_version "4"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	exon	74699180	74700208	.	+	.	gene_id "ENSMUSG00000043342"; gene_version "9"; transcript_id "ENSMUST00000059272"; transcript_version "9"; exon_number "2"; gene_name "Hoxd9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016552"; havana_gene_version "4"; transcript_name "Hoxd9-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16142"; havana_transcript "OTTMUST00000040004"; havana_transcript_version "4"; exon_id "ENSMUSE00000351804"; exon_version "8"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	CDS	74699180	74699418	.	+	2	gene_id "ENSMUSG00000043342"; gene_version "9"; transcript_id "ENSMUST00000059272"; transcript_version "9"; exon_number "2"; gene_name "Hoxd9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016552"; havana_gene_version "4"; transcript_name "Hoxd9-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16142"; havana_transcript "OTTMUST00000040004"; havana_transcript_version "4"; protein_id "ENSMUSP00000058490"; protein_version "8"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	stop_codon	74699419	74699421	.	+	0	gene_id "ENSMUSG00000043342"; gene_version "9"; transcript_id "ENSMUST00000059272"; transcript_version "9"; exon_number "2"; gene_name "Hoxd9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016552"; havana_gene_version "4"; transcript_name "Hoxd9-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16142"; havana_transcript "OTTMUST00000040004"; havana_transcript_version "4"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	five_prime_utr	74697727	74698055	.	+	.	gene_id "ENSMUSG00000043342"; gene_version "9"; transcript_id "ENSMUST00000059272"; transcript_version "9"; gene_name "Hoxd9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016552"; havana_gene_version "4"; transcript_name "Hoxd9-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16142"; havana_transcript "OTTMUST00000040004"; havana_transcript_version "4"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	three_prime_utr	74699422	74700208	.	+	.	gene_id "ENSMUSG00000043342"; gene_version "9"; transcript_id "ENSMUST00000059272"; transcript_version "9"; gene_name "Hoxd9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016552"; havana_gene_version "4"; transcript_name "Hoxd9-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16142"; havana_transcript "OTTMUST00000040004"; havana_transcript_version "4"; tag "basic"; transcript_support_level "1";
+chr2	ensembl	gene	74701006	74701142	.	-	.	gene_id "ENSMUSG00000104570"; gene_version "1"; gene_name "Gm44463"; gene_source "ensembl"; gene_biotype "miRNA";
+chr2	ensembl	transcript	74701006	74701142	.	-	.	gene_id "ENSMUSG00000104570"; gene_version "1"; transcript_id "ENSMUST00000198895"; transcript_version "1"; gene_name "Gm44463"; gene_source "ensembl"; gene_biotype "miRNA"; transcript_name "Gm44463-201"; transcript_source "ensembl"; transcript_biotype "miRNA"; tag "basic"; transcript_support_level "NA";
+chr2	ensembl	exon	74701006	74701142	.	-	.	gene_id "ENSMUSG00000104570"; gene_version "1"; transcript_id "ENSMUST00000198895"; transcript_version "1"; exon_number "1"; gene_name "Gm44463"; gene_source "ensembl"; gene_biotype "miRNA"; transcript_name "Gm44463-201"; transcript_source "ensembl"; transcript_biotype "miRNA"; exon_id "ENSMUSE00001352249"; exon_version "1"; tag "basic"; transcript_support_level "NA";
+chr2	ensembl_havana	gene	74703248	74716130	.	-	.	gene_id "ENSMUSG00000052371"; gene_version "5"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1";
+chr2	havana	transcript	74703248	74712054	.	-	.	gene_id "ENSMUSG00000052371"; gene_version "5"; transcript_id "ENSMUST00000132326"; transcript_version "1"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1"; transcript_name "Hoxd3os1-201"; transcript_source "havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000040117"; havana_transcript_version "1"; transcript_support_level "3";
+chr2	havana	exon	74711970	74712054	.	-	.	gene_id "ENSMUSG00000052371"; gene_version "5"; transcript_id "ENSMUST00000132326"; transcript_version "1"; exon_number "1"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1"; transcript_name "Hoxd3os1-201"; transcript_source "havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000040117"; havana_transcript_version "1"; exon_id "ENSMUSE00000793320"; exon_version "1"; transcript_support_level "3";
+chr2	havana	exon	74703248	74703622	.	-	.	gene_id "ENSMUSG00000052371"; gene_version "5"; transcript_id "ENSMUST00000132326"; transcript_version "1"; exon_number "2"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1"; transcript_name "Hoxd3os1-201"; transcript_source "havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000040117"; havana_transcript_version "1"; exon_id "ENSMUSE00000821641"; exon_version "1"; transcript_support_level "3";
+chr2	ensembl_havana	transcript	74710043	74712526	.	-	.	gene_id "ENSMUSG00000052371"; gene_version "5"; transcript_id "ENSMUST00000156342"; transcript_version "1"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1"; transcript_name "Hoxd3os1-204"; transcript_source "ensembl_havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000040116"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	exon	74711970	74712526	.	-	.	gene_id "ENSMUSG00000052371"; gene_version "5"; transcript_id "ENSMUST00000156342"; transcript_version "1"; exon_number "1"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1"; transcript_name "Hoxd3os1-204"; transcript_source "ensembl_havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000040116"; havana_transcript_version "1"; exon_id "ENSMUSE00000842711"; exon_version "1"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	exon	74710043	74710281	.	-	.	gene_id "ENSMUSG00000052371"; gene_version "5"; transcript_id "ENSMUST00000156342"; transcript_version "1"; exon_number "2"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1"; transcript_name "Hoxd3os1-204"; transcript_source "ensembl_havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000040116"; havana_transcript_version "1"; exon_id "ENSMUSE00000734798"; exon_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	transcript	74710193	74715996	.	-	.	gene_id "ENSMUSG00000052371"; gene_version "5"; transcript_id "ENSMUST00000145799"; transcript_version "1"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1"; transcript_name "Hoxd3os1-203"; transcript_source "havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000040114"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	exon	74715706	74715996	.	-	.	gene_id "ENSMUSG00000052371"; gene_version "5"; transcript_id "ENSMUST00000145799"; transcript_version "1"; exon_number "1"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1"; transcript_name "Hoxd3os1-203"; transcript_source "havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000040114"; havana_transcript_version "1"; exon_id "ENSMUSE00000743618"; exon_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	exon	74714271	74714401	.	-	.	gene_id "ENSMUSG00000052371"; gene_version "5"; transcript_id "ENSMUST00000145799"; transcript_version "1"; exon_number "2"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1"; transcript_name "Hoxd3os1-203"; transcript_source "havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000040114"; havana_transcript_version "1"; exon_id "ENSMUSE00000733703"; exon_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	exon	74710193	74710281	.	-	.	gene_id "ENSMUSG00000052371"; gene_version "5"; transcript_id "ENSMUST00000145799"; transcript_version "1"; exon_number "3"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1"; transcript_name "Hoxd3os1-203"; transcript_source "havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000040114"; havana_transcript_version "1"; exon_id "ENSMUSE00000841303"; exon_version "1"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	transcript	74713126	74716130	.	-	.	gene_id "ENSMUSG00000052371"; gene_version "5"; transcript_id "ENSMUST00000139005"; transcript_version "1"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1"; transcript_name "Hoxd3os1-202"; transcript_source "ensembl_havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000040115"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	exon	74715706	74716130	.	-	.	gene_id "ENSMUSG00000052371"; gene_version "5"; transcript_id "ENSMUST00000139005"; transcript_version "1"; exon_number "1"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1"; transcript_name "Hoxd3os1-202"; transcript_source "ensembl_havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000040115"; havana_transcript_version "1"; exon_id "ENSMUSE00000734469"; exon_version "1"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	exon	74713126	74714401	.	-	.	gene_id "ENSMUSG00000052371"; gene_version "5"; transcript_id "ENSMUST00000139005"; transcript_version "1"; exon_number "2"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1"; transcript_name "Hoxd3os1-202"; transcript_source "ensembl_havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000040115"; havana_transcript_version "1"; exon_id "ENSMUSE00000862774"; exon_version "1"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	gene	74704615	74707933	.	+	.	gene_id "ENSMUSG00000027102"; gene_version "4"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4";
+chr2	havana	transcript	74704615	74706812	.	+	.	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000151380"; transcript_version "1"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS79809"; havana_transcript "OTTMUST00000040119"; havana_transcript_version "3"; tag "basic"; transcript_support_level "2";
+chr2	havana	exon	74704615	74704724	.	+	.	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000151380"; transcript_version "1"; exon_number "1"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS79809"; havana_transcript "OTTMUST00000040119"; havana_transcript_version "3"; exon_id "ENSMUSE00000819713"; exon_version "1"; tag "basic"; transcript_support_level "2";
+chr2	havana	exon	74705971	74706118	.	+	.	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000151380"; transcript_version "1"; exon_number "2"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS79809"; havana_transcript "OTTMUST00000040119"; havana_transcript_version "3"; exon_id "ENSMUSE00000690072"; exon_version "1"; tag "basic"; transcript_support_level "2";
+chr2	havana	CDS	74706094	74706118	.	+	0	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000151380"; transcript_version "1"; exon_number "2"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS79809"; havana_transcript "OTTMUST00000040119"; havana_transcript_version "3"; protein_id "ENSMUSP00000118904"; protein_version "2"; tag "basic"; transcript_support_level "2";
+chr2	havana	start_codon	74706094	74706096	.	+	0	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000151380"; transcript_version "1"; exon_number "2"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS79809"; havana_transcript "OTTMUST00000040119"; havana_transcript_version "3"; tag "basic"; transcript_support_level "2";
+chr2	havana	exon	74706514	74706812	.	+	.	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000151380"; transcript_version "1"; exon_number "3"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS79809"; havana_transcript "OTTMUST00000040119"; havana_transcript_version "3"; exon_id "ENSMUSE00000729425"; exon_version "1"; tag "basic"; transcript_support_level "2";
+chr2	havana	CDS	74706514	74706809	.	+	2	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000151380"; transcript_version "1"; exon_number "3"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS79809"; havana_transcript "OTTMUST00000040119"; havana_transcript_version "3"; protein_id "ENSMUSP00000118904"; protein_version "2"; tag "basic"; transcript_support_level "2";
+chr2	havana	stop_codon	74706810	74706812	.	+	0	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000151380"; transcript_version "1"; exon_number "3"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS79809"; havana_transcript "OTTMUST00000040119"; havana_transcript_version "3"; tag "basic"; transcript_support_level "2";
+chr2	havana	five_prime_utr	74704615	74704724	.	+	.	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000151380"; transcript_version "1"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS79809"; havana_transcript "OTTMUST00000040119"; havana_transcript_version "3"; tag "basic"; transcript_support_level "2";
+chr2	havana	five_prime_utr	74705971	74706093	.	+	.	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000151380"; transcript_version "1"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS79809"; havana_transcript "OTTMUST00000040119"; havana_transcript_version "3"; tag "basic"; transcript_support_level "2";
+chr2	ensembl_havana	transcript	74704905	74707933	.	+	.	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000019749"; transcript_version "3"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16143"; havana_transcript "OTTMUST00000040000"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	exon	74704905	74706118	.	+	.	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000019749"; transcript_version "3"; exon_number "1"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16143"; havana_transcript "OTTMUST00000040000"; havana_transcript_version "2"; exon_id "ENSMUSE00000387604"; exon_version "3"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	CDS	74705548	74706118	.	+	0	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000019749"; transcript_version "3"; exon_number "1"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16143"; havana_transcript "OTTMUST00000040000"; havana_transcript_version "2"; protein_id "ENSMUSP00000019749"; protein_version "3"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	start_codon	74705548	74705550	.	+	0	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000019749"; transcript_version "3"; exon_number "1"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16143"; havana_transcript "OTTMUST00000040000"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	exon	74706514	74707933	.	+	.	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000019749"; transcript_version "3"; exon_number "2"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16143"; havana_transcript "OTTMUST00000040000"; havana_transcript_version "2"; exon_id "ENSMUSE00000749776"; exon_version "1"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	CDS	74706514	74706809	.	+	2	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000019749"; transcript_version "3"; exon_number "2"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16143"; havana_transcript "OTTMUST00000040000"; havana_transcript_version "2"; protein_id "ENSMUSP00000019749"; protein_version "3"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	stop_codon	74706810	74706812	.	+	0	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000019749"; transcript_version "3"; exon_number "2"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16143"; havana_transcript "OTTMUST00000040000"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	five_prime_utr	74704905	74705547	.	+	.	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000019749"; transcript_version "3"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16143"; havana_transcript "OTTMUST00000040000"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	three_prime_utr	74706813	74707933	.	+	.	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000019749"; transcript_version "3"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16143"; havana_transcript "OTTMUST00000040000"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
+chr2	havana	transcript	74705152	74707307	.	+	.	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000074721"; transcript_version "5"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS71077"; havana_transcript "OTTMUST00000040118"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	exon	74705152	74706118	.	+	.	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000074721"; transcript_version "5"; exon_number "1"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS71077"; havana_transcript "OTTMUST00000040118"; havana_transcript_version "1"; exon_id "ENSMUSE00000690069"; exon_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	CDS	74705548	74706118	.	+	0	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000074721"; transcript_version "5"; exon_number "1"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS71077"; havana_transcript "OTTMUST00000040118"; havana_transcript_version "1"; protein_id "ENSMUSP00000088094"; protein_version "4"; tag "basic"; transcript_support_level "1";
+chr2	havana	start_codon	74705548	74705550	.	+	0	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000074721"; transcript_version "5"; exon_number "1"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS71077"; havana_transcript "OTTMUST00000040118"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	exon	74706517	74707307	.	+	.	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000074721"; transcript_version "5"; exon_number "2"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS71077"; havana_transcript "OTTMUST00000040118"; havana_transcript_version "1"; exon_id "ENSMUSE00000690067"; exon_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	CDS	74706517	74706809	.	+	2	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000074721"; transcript_version "5"; exon_number "2"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS71077"; havana_transcript "OTTMUST00000040118"; havana_transcript_version "1"; protein_id "ENSMUSP00000088094"; protein_version "4"; tag "basic"; transcript_support_level "1";
+chr2	havana	stop_codon	74706810	74706812	.	+	0	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000074721"; transcript_version "5"; exon_number "2"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS71077"; havana_transcript "OTTMUST00000040118"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	five_prime_utr	74705152	74705547	.	+	.	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000074721"; transcript_version "5"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS71077"; havana_transcript "OTTMUST00000040118"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	three_prime_utr	74706813	74707307	.	+	.	gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000074721"; transcript_version "5"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS71077"; havana_transcript "OTTMUST00000040118"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	gene	74711927	74748442	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14";
+chr2	ensembl_havana	transcript	74711927	74748271	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111983"; transcript_version "8"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-203"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040120"; havana_transcript_version "15"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	exon	74711927	74712316	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111983"; transcript_version "8"; exon_number "1"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-203"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040120"; havana_transcript_version "15"; exon_id "ENSMUSE00001334697"; exon_version "1"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	exon	74743928	74744555	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111983"; transcript_version "8"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-203"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040120"; havana_transcript_version "15"; exon_id "ENSMUSE00001328611"; exon_version "1"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	CDS	74744012	74744555	.	+	0	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111983"; transcript_version "8"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-203"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040120"; havana_transcript_version "15"; protein_id "ENSMUSP00000107614"; protein_version "2"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	start_codon	74744012	74744014	.	+	0	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111983"; transcript_version "8"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-203"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040120"; havana_transcript_version "15"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	exon	74746322	74748271	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111983"; transcript_version "8"; exon_number "3"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-203"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040120"; havana_transcript_version "15"; exon_id "ENSMUSE00000690056"; exon_version "3"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	CDS	74746322	74747076	.	+	2	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111983"; transcript_version "8"; exon_number "3"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-203"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040120"; havana_transcript_version "15"; protein_id "ENSMUSP00000107614"; protein_version "2"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	stop_codon	74747077	74747079	.	+	0	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111983"; transcript_version "8"; exon_number "3"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-203"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040120"; havana_transcript_version "15"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	five_prime_utr	74711927	74712316	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111983"; transcript_version "8"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-203"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040120"; havana_transcript_version "15"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	five_prime_utr	74743928	74744011	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111983"; transcript_version "8"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-203"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040120"; havana_transcript_version "15"; tag "basic"; transcript_support_level "1";
+chr2	ensembl_havana	three_prime_utr	74747080	74748271	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111983"; transcript_version "8"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-203"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040120"; havana_transcript_version "15"; tag "basic"; transcript_support_level "1";
+chr2	havana	transcript	74732913	74744214	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000144544"; transcript_version "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-205"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040125"; havana_transcript_version "5"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
+chr2	havana	exon	74732913	74733040	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000144544"; transcript_version "2"; exon_number "1"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-205"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040125"; havana_transcript_version "5"; exon_id "ENSMUSE00000729707"; exon_version "2"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
+chr2	havana	exon	74743928	74744214	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000144544"; transcript_version "2"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-205"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040125"; havana_transcript_version "5"; exon_id "ENSMUSE00000710772"; exon_version "2"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
+chr2	havana	CDS	74744012	74744214	.	+	0	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000144544"; transcript_version "2"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-205"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040125"; havana_transcript_version "5"; protein_id "ENSMUSP00000134633"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
+chr2	havana	start_codon	74744012	74744014	.	+	0	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000144544"; transcript_version "2"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-205"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040125"; havana_transcript_version "5"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
+chr2	havana	five_prime_utr	74732913	74733040	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000144544"; transcript_version "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-205"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040125"; havana_transcript_version "5"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
+chr2	havana	five_prime_utr	74743928	74744011	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000144544"; transcript_version "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-205"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040125"; havana_transcript_version "5"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
+chr2	havana	transcript	74736515	74747915	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111982"; transcript_version "7"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040123"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	exon	74736515	74736705	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111982"; transcript_version "7"; exon_number "1"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040123"; havana_transcript_version "1"; exon_id "ENSMUSE00000690055"; exon_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	exon	74743928	74744555	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111982"; transcript_version "7"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040123"; havana_transcript_version "1"; exon_id "ENSMUSE00001328611"; exon_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	CDS	74744012	74744555	.	+	0	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111982"; transcript_version "7"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040123"; havana_transcript_version "1"; protein_id "ENSMUSP00000107613"; protein_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	start_codon	74744012	74744014	.	+	0	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111982"; transcript_version "7"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040123"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	exon	74746322	74747915	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111982"; transcript_version "7"; exon_number "3"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040123"; havana_transcript_version "1"; exon_id "ENSMUSE00000690054"; exon_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	CDS	74746322	74747076	.	+	2	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111982"; transcript_version "7"; exon_number "3"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040123"; havana_transcript_version "1"; protein_id "ENSMUSP00000107613"; protein_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	stop_codon	74747077	74747079	.	+	0	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111982"; transcript_version "7"; exon_number "3"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040123"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	five_prime_utr	74736515	74736705	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111982"; transcript_version "7"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040123"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	five_prime_utr	74743928	74744011	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111982"; transcript_version "7"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040123"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	three_prime_utr	74747080	74747915	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111982"; transcript_version "7"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040123"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	transcript	74739619	74747900	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000047830"; transcript_version "7"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040124"; havana_transcript_version "1"; tag "basic"; transcript_support_level "5";
+chr2	havana	exon	74739619	74739703	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000047830"; transcript_version "7"; exon_number "1"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040124"; havana_transcript_version "1"; exon_id "ENSMUSE00000690052"; exon_version "1"; tag "basic"; transcript_support_level "5";
+chr2	havana	exon	74743928	74744555	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000047830"; transcript_version "7"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040124"; havana_transcript_version "1"; exon_id "ENSMUSE00001328611"; exon_version "1"; tag "basic"; transcript_support_level "5";
+chr2	havana	CDS	74744012	74744555	.	+	0	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000047830"; transcript_version "7"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040124"; havana_transcript_version "1"; protein_id "ENSMUSP00000044809"; protein_version "6"; tag "basic"; transcript_support_level "5";
+chr2	havana	start_codon	74744012	74744014	.	+	0	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000047830"; transcript_version "7"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040124"; havana_transcript_version "1"; tag "basic"; transcript_support_level "5";
+chr2	havana	exon	74746322	74747900	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000047830"; transcript_version "7"; exon_number "3"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040124"; havana_transcript_version "1"; exon_id "ENSMUSE00000566207"; exon_version "2"; tag "basic"; transcript_support_level "5";
+chr2	havana	CDS	74746322	74747076	.	+	2	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000047830"; transcript_version "7"; exon_number "3"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040124"; havana_transcript_version "1"; protein_id "ENSMUSP00000044809"; protein_version "6"; tag "basic"; transcript_support_level "5";
+chr2	havana	stop_codon	74747077	74747079	.	+	0	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000047830"; transcript_version "7"; exon_number "3"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040124"; havana_transcript_version "1"; tag "basic"; transcript_support_level "5";
+chr2	havana	five_prime_utr	74739619	74739703	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000047830"; transcript_version "7"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040124"; havana_transcript_version "1"; tag "basic"; transcript_support_level "5";
+chr2	havana	five_prime_utr	74743928	74744011	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000047830"; transcript_version "7"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040124"; havana_transcript_version "1"; tag "basic"; transcript_support_level "5";
+chr2	havana	three_prime_utr	74747080	74747900	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000047830"; transcript_version "7"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040124"; havana_transcript_version "1"; tag "basic"; transcript_support_level "5";
+chr2	havana	transcript	74745674	74746596	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000140666"; transcript_version "1"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040126"; havana_transcript_version "3"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
+chr2	havana	exon	74745674	74746220	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000140666"; transcript_version "1"; exon_number "1"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040126"; havana_transcript_version "3"; exon_id "ENSMUSE00000738733"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
+chr2	havana	CDS	74746157	74746220	.	+	0	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000140666"; transcript_version "1"; exon_number "1"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040126"; havana_transcript_version "3"; protein_id "ENSMUSP00000134616"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
+chr2	havana	start_codon	74746157	74746159	.	+	0	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000140666"; transcript_version "1"; exon_number "1"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040126"; havana_transcript_version "3"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
+chr2	havana	exon	74746322	74746596	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000140666"; transcript_version "1"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040126"; havana_transcript_version "3"; exon_id "ENSMUSE00000837851"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
+chr2	havana	CDS	74746322	74746596	.	+	2	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000140666"; transcript_version "1"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040126"; havana_transcript_version "3"; protein_id "ENSMUSP00000134616"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
+chr2	havana	five_prime_utr	74745674	74746156	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000140666"; transcript_version "1"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040126"; havana_transcript_version "3"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
+chr2	havana	transcript	74745722	74748442	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000190553"; transcript_version "1"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-206"; transcript_source "havana"; transcript_biotype "retained_intron"; havana_transcript "OTTMUST00000120192"; havana_transcript_version "1"; tag "mRNA_end_NF"; transcript_support_level "NA";
+chr2	havana	exon	74745722	74748442	.	+	.	gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000190553"; transcript_version "1"; exon_number "1"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-206"; transcript_source "havana"; transcript_biotype "retained_intron"; havana_transcript "OTTMUST00000120192"; havana_transcript_version "1"; exon_id "ENSMUSE00001319756"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "NA";
+chr2	ensembl_havana	gene	74711929	74729160	.	+	.	gene_id "ENSMUSG00000101174"; gene_version "8"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17";
+chr2	havana	transcript	74711929	74728868	.	+	.	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000144040"; transcript_version "8"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-203"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000040121"; havana_transcript_version "16"; transcript_support_level "1";
+chr2	havana	exon	74711929	74712316	.	+	.	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000144040"; transcript_version "8"; exon_number "1"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-203"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000040121"; havana_transcript_version "16"; exon_id "ENSMUSE00000690059"; exon_version "2"; transcript_support_level "1";
+chr2	havana	exon	74722553	74722631	.	+	.	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000144040"; transcript_version "8"; exon_number "2"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-203"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000040121"; havana_transcript_version "16"; exon_id "ENSMUSE00001456804"; exon_version "1"; transcript_support_level "1";
+chr2	havana	exon	74723332	74723367	.	+	.	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000144040"; transcript_version "8"; exon_number "3"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-203"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000040121"; havana_transcript_version "16"; exon_id "ENSMUSE00001459290"; exon_version "1"; transcript_support_level "1";
+chr2	havana	exon	74725463	74725597	.	+	.	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000144040"; transcript_version "8"; exon_number "4"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-203"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000040121"; havana_transcript_version "16"; exon_id "ENSMUSE00000766717"; exon_version "1"; transcript_support_level "1";
+chr2	havana	exon	74725845	74725978	.	+	.	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000144040"; transcript_version "8"; exon_number "5"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-203"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000040121"; havana_transcript_version "16"; exon_id "ENSMUSE00000795268"; exon_version "1"; transcript_support_level "1";
+chr2	havana	exon	74726876	74726932	.	+	.	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000144040"; transcript_version "8"; exon_number "6"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-203"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000040121"; havana_transcript_version "16"; exon_id "ENSMUSE00000795377"; exon_version "1"; transcript_support_level "1";
+chr2	havana	exon	74728359	74728868	.	+	.	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000144040"; transcript_version "8"; exon_number "7"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-203"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000040121"; havana_transcript_version "16"; exon_id "ENSMUSE00000723430"; exon_version "2"; transcript_support_level "1";
+chr2	ensembl	transcript	74721978	74729160	.	+	.	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; tag "basic"; transcript_support_level "5";
+chr2	ensembl	exon	74721978	74722177	.	+	.	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; exon_number "1"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; exon_id "ENSMUSE00000330193"; exon_version "1"; tag "basic"; transcript_support_level "5";
+chr2	ensembl	exon	74722553	74722631	.	+	.	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; exon_number "2"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; exon_id "ENSMUSE00001456804"; exon_version "1"; tag "basic"; transcript_support_level "5";
+chr2	ensembl	exon	74723332	74723367	.	+	.	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; exon_number "3"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; exon_id "ENSMUSE00001459290"; exon_version "1"; tag "basic"; transcript_support_level "5";
+chr2	ensembl	exon	74725463	74725978	.	+	.	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; exon_number "4"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; exon_id "ENSMUSE00000330175"; exon_version "1"; tag "basic"; transcript_support_level "5";
+chr2	ensembl	exon	74726876	74727705	.	+	.	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; exon_number "5"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; exon_id "ENSMUSE00000476301"; exon_version "1"; tag "basic"; transcript_support_level "5";
+chr2	ensembl	CDS	74727279	74727705	.	+	0	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; exon_number "5"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; protein_id "ENSMUSP00000047949"; protein_version "3"; tag "basic"; transcript_support_level "5";
+chr2	ensembl	start_codon	74727279	74727281	.	+	0	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; exon_number "5"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; tag "basic"; transcript_support_level "5";
+chr2	ensembl	exon	74728262	74729160	.	+	.	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; exon_number "6"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; exon_id "ENSMUSE00000479221"; exon_version "2"; tag "basic"; transcript_support_level "5";
+chr2	ensembl	CDS	74728262	74728584	.	+	2	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; exon_number "6"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; protein_id "ENSMUSP00000047949"; protein_version "3"; tag "basic"; transcript_support_level "5";
+chr2	ensembl	stop_codon	74728585	74728587	.	+	0	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; exon_number "6"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; tag "basic"; transcript_support_level "5";
+chr2	ensembl	five_prime_utr	74721978	74722177	.	+	.	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; tag "basic"; transcript_support_level "5";
+chr2	ensembl	five_prime_utr	74722553	74722631	.	+	.	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; tag "basic"; transcript_support_level "5";
+chr2	ensembl	five_prime_utr	74723332	74723367	.	+	.	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; tag "basic"; transcript_support_level "5";
+chr2	ensembl	five_prime_utr	74725463	74725978	.	+	.	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; tag "basic"; transcript_support_level "5";
+chr2	ensembl	five_prime_utr	74726876	74727278	.	+	.	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; tag "basic"; transcript_support_level "5";
+chr2	ensembl	three_prime_utr	74728588	74729160	.	+	.	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; tag "basic"; transcript_support_level "5";
+chr2	havana	transcript	74727074	74729123	.	+	.	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000111980"; transcript_version "3"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; havana_transcript "OTTMUST00000040129"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
+chr2	havana	exon	74727074	74727705	.	+	.	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000111980"; transcript_version "3"; exon_number "1"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; havana_transcript "OTTMUST00000040129"; havana_transcript_version "3"; exon_id "ENSMUSE00000690044"; exon_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	CDS	74727279	74727705	.	+	0	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000111980"; transcript_version "3"; exon_number "1"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; havana_transcript "OTTMUST00000040129"; havana_transcript_version "3"; protein_id "ENSMUSP00000107611"; protein_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	start_codon	74727279	74727281	.	+	0	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000111980"; transcript_version "3"; exon_number "1"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; havana_transcript "OTTMUST00000040129"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
+chr2	havana	exon	74728262	74729123	.	+	.	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000111980"; transcript_version "3"; exon_number "2"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; havana_transcript "OTTMUST00000040129"; havana_transcript_version "3"; exon_id "ENSMUSE00000690043"; exon_version "3"; tag "basic"; transcript_support_level "1";
+chr2	havana	CDS	74728262	74728584	.	+	2	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000111980"; transcript_version "3"; exon_number "2"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; havana_transcript "OTTMUST00000040129"; havana_transcript_version "3"; protein_id "ENSMUSP00000107611"; protein_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	stop_codon	74728585	74728587	.	+	0	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000111980"; transcript_version "3"; exon_number "2"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; havana_transcript "OTTMUST00000040129"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
+chr2	havana	five_prime_utr	74727074	74727278	.	+	.	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000111980"; transcript_version "3"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; havana_transcript "OTTMUST00000040129"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
+chr2	havana	three_prime_utr	74728588	74729123	.	+	.	gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000111980"; transcript_version "3"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; havana_transcript "OTTMUST00000040129"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
+chr2	mirbase	gene	74726070	74726137	.	+	.	gene_id "ENSMUSG00000065500"; gene_version "3"; gene_name "Mir10b"; gene_source "mirbase"; gene_biotype "miRNA";
+chr2	mirbase	transcript	74726070	74726137	.	+	.	gene_id "ENSMUSG00000065500"; gene_version "3"; transcript_id "ENSMUST00000083566"; transcript_version "3"; gene_name "Mir10b"; gene_source "mirbase"; gene_biotype "miRNA"; transcript_name "Mir10b-201"; transcript_source "mirbase"; transcript_biotype "miRNA"; tag "basic"; transcript_support_level "NA";
+chr2	mirbase	exon	74726070	74726137	.	+	.	gene_id "ENSMUSG00000065500"; gene_version "3"; transcript_id "ENSMUST00000083566"; transcript_version "3"; exon_number "1"; gene_name "Mir10b"; gene_source "mirbase"; gene_biotype "miRNA"; transcript_name "Mir10b-201"; transcript_source "mirbase"; transcript_biotype "miRNA"; exon_id "ENSMUSE00000522725"; exon_version "3"; tag "basic"; transcript_support_level "NA";
+chr2	havana	gene	74726728	74747918	.	+	.	gene_id "ENSMUSG00000100642"; gene_version "1"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1";
+chr2	havana	transcript	74726728	74747918	.	+	.	gene_id "ENSMUSG00000100642"; gene_version "1"; transcript_id "ENSMUST00000053932"; transcript_version "6"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1"; transcript_name "Gm28230-201"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000040122"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
+chr2	havana	exon	74726728	74727705	.	+	.	gene_id "ENSMUSG00000100642"; gene_version "1"; transcript_id "ENSMUST00000053932"; transcript_version "6"; exon_number "1"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1"; transcript_name "Gm28230-201"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000040122"; havana_transcript_version "2"; exon_id "ENSMUSE00000644413"; exon_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	CDS	74727279	74727705	.	+	0	gene_id "ENSMUSG00000100642"; gene_version "1"; transcript_id "ENSMUST00000053932"; transcript_version "6"; exon_number "1"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1"; transcript_name "Gm28230-201"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000040122"; havana_transcript_version "2"; protein_id "ENSMUSP00000051355"; protein_version "6"; tag "basic"; transcript_support_level "1";
+chr2	havana	start_codon	74727279	74727281	.	+	0	gene_id "ENSMUSG00000100642"; gene_version "1"; transcript_id "ENSMUST00000053932"; transcript_version "6"; exon_number "1"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1"; transcript_name "Gm28230-201"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000040122"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
+chr2	havana	exon	74728359	74728682	.	+	.	gene_id "ENSMUSG00000100642"; gene_version "1"; transcript_id "ENSMUST00000053932"; transcript_version "6"; exon_number "2"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1"; transcript_name "Gm28230-201"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000040122"; havana_transcript_version "2"; exon_id "ENSMUSE00000644412"; exon_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	CDS	74728359	74728363	.	+	2	gene_id "ENSMUSG00000100642"; gene_version "1"; transcript_id "ENSMUST00000053932"; transcript_version "6"; exon_number "2"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1"; transcript_name "Gm28230-201"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000040122"; havana_transcript_version "2"; protein_id "ENSMUSP00000051355"; protein_version "6"; tag "basic"; transcript_support_level "1";
+chr2	havana	stop_codon	74728364	74728366	.	+	0	gene_id "ENSMUSG00000100642"; gene_version "1"; transcript_id "ENSMUST00000053932"; transcript_version "6"; exon_number "2"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1"; transcript_name "Gm28230-201"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000040122"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
+chr2	havana	exon	74743928	74744555	.	+	.	gene_id "ENSMUSG00000100642"; gene_version "1"; transcript_id "ENSMUST00000053932"; transcript_version "6"; exon_number "3"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1"; transcript_name "Gm28230-201"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000040122"; havana_transcript_version "2"; exon_id "ENSMUSE00001323912"; exon_version "1"; tag "basic"; transcript_support_level "1";
+chr2	havana	exon	74746322	74747918	.	+	.	gene_id "ENSMUSG00000100642"; gene_version "1"; transcript_id "ENSMUST00000053932"; transcript_version "6"; exon_number "4"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1"; transcript_name "Gm28230-201"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000040122"; havana_transcript_version "2"; exon_id "ENSMUSE00000601603"; exon_version "3"; tag "basic"; transcript_support_level "1";
+chr2	havana	five_prime_utr	74726728	74727278	.	+	.	gene_id "ENSMUSG00000100642"; gene_version "1"; transcript_id "ENSMUST00000053932"; transcript_version "6"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1"; transcript_name "Gm28230-201"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000040122"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
+chr2	havana	three_prime_utr	74728367	74728682	.	+	.	gene_id "ENSMUSG00000100642"; gene_version "1"; transcript_id "ENSMUST00000053932"; transcript_version "6"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1"; transcript_name "Gm28230-201"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000040122"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
+chr2	havana	three_prime_utr	74743928	74744555	.	+	.	gene_id "ENSMUSG00000100642"; gene_version "1"; transcript_id "ENSMUST00000053932"; transcript_version "6"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1"; transcript_name "Gm28230-201"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000040122"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
+chr2	havana	three_prime_utr	74746322	74747918	.	+	.	gene_id "ENSMUSG00000100642"; gene_version "1"; transcript_id "ENSMUST00000053932"; transcript_version "6"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1"; transcript_name "Gm28230-201"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000040122"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";