diff tool-data/homer_preparse.loc.sample @ 0:adab852c8216 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
author iuc
date Sun, 08 Aug 2021 11:03:29 +0000
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+++ b/tool-data/homer_preparse.loc.sample	Sun Aug 08 11:03:29 2021 +0000
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+# homer_preparse.loc.sample
+# This is a *.loc.sample file distributed with Galaxy that enables tools
+# to use a directory of indexed data files. This one is for Homer preparsed genomes.
+# The file should include an one line entry for each index set.
+# The path points to the "directory" for the set, not a specific file.
+# It has six text columns seperated by TABS.
+#
+# <unique_preparse_id>	<dbkey>	<mask>	<size>	<display_name>	<directory_path>	<path_fasta>	<version>
+#
+# So, for example, if you had phiX174 preparsed with 200bp stored in:
+#
+#    /tmp/phix_200
+#
+# containing phiX174.fasta.200.* files, such as:
+# -rw-r--r--  1 ldelisle ldelisle  83K Jul  9 10:14 phiX174.fasta.200.cgbins
+# -rw-r--r--  1 ldelisle ldelisle 249K Jul  9 10:14 phiX174.fasta.200.cgfreq
+# -rw-r--r--  1 ldelisle ldelisle  83K Jul  9 10:14 phiX174.fasta.200.gcbins
+# -rw-r--r--  1 ldelisle ldelisle 169K Jul  9 10:14 phiX174.fasta.200.pos
+# -rw-r--r--  1 ldelisle ldelisle 955K Jul  9 10:14 phiX174.fasta.200.seq
+#
+# then the homer_preparse.loc entry could look like this:
+#
+# phiX174_200	phiX174	False	200	phiX174 (200bp)	/tmp/phix_200	/tmp/phiX174.fasta	4.11
+#
+#