view tool-data/homer_preparse.loc.sample @ 1:38d10a69748a draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit a03582e72f78a25fb4d840a1ec0cb4ef61473bb9"

# homer_preparse.loc.sample
# This is a *.loc.sample file distributed with Galaxy that enables tools
# to use a directory of indexed data files. This one is for Homer preparsed genomes.
# The file should include an one line entry for each index set.
# The path points to the "directory" for the set, not a specific file.
# It has six text columns seperated by TABS.
#
# <unique_preparse_id>	<dbkey>	<mask>	<size>	<display_name>	<directory_path>	<path_fasta>	<version>
#
# So, for example, if you had phiX174 preparsed with 200bp stored in:
#
#    /tmp/phix_200
#
# containing phiX174.fasta.200.* files, such as:
# -rw-r--r--  1 ldelisle ldelisle  83K Jul  9 10:14 phiX174.fasta.200.cgbins
# -rw-r--r--  1 ldelisle ldelisle 249K Jul  9 10:14 phiX174.fasta.200.cgfreq
# -rw-r--r--  1 ldelisle ldelisle  83K Jul  9 10:14 phiX174.fasta.200.gcbins
# -rw-r--r--  1 ldelisle ldelisle 169K Jul  9 10:14 phiX174.fasta.200.pos
# -rw-r--r--  1 ldelisle ldelisle 955K Jul  9 10:14 phiX174.fasta.200.seq
#
# then the homer_preparse.loc entry could look like this:
#
# phiX174_200	phiX174	False	200	phiX174 (200bp)	/tmp/phix_200	/tmp/phiX174.fasta	4.11
#
#