view macros.xml @ 0:adab852c8216 draft

"planemo upload for repository commit e49d856e0181edc6120220a1b819cba2466a4289"
author iuc
date Sun, 08 Aug 2021 11:03:29 +0000
children 38d10a69748a
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    <token name="@TOOL_VERSION@">4.11</token>
    <!-- HOMER index version compatible with this version of HOMER
    This is the HOMER version that introduced the preparsed structure expected
    by the current version. -->
    <token name="@IDX_VERSION@">4.11</token>
    <token name="@VERSION_SUFFIX@">0</token>
    <xml name="xrefs">
            <xref type="">homer</xref>
    <xml name="requirements">
            <requirement type="package" version="4.11">homer</requirement>
    <xml name="choose_center">
        <conditional name="choose_center">
            <param name="center" type="select" label="Do you want to center your sequence on the peak center?">
                <option value="centered" selected="True">Yes</option>
                <option value="manual">No, I want asymetric (raise an error if given was chosen above)</option>
            <when value="centered"/>
            <when value="manual">
                <param name="sizes" type="integer" value="-100" label="sequence start relative to center"/>
    <xml name="mask_size">
        <param argument="-mask" type="boolean" truevalue="True" falsevalue="False" label="mask repeats/lower case sequence"/>
        <conditional name="fixed_size">
            <param name="size_fixed" type="select" label="Do you want a fixed fragment size?">
                <option value="fixed" selected="True">Yes</option>
                <option value="given">No, I want to keep the size of my peaks (-size given)</option>
            <when value="given"/>
            <when value="fixed">
                <param argument="-size" type="integer" min="0" value="200" label="fragment size in bp"/>
                <expand macro="choose_center"/>
    <xml name="citation">
            <citation type="doi">10.1016/j.molcel.2010.05.004</citation>