comparison homer_findMotifsGenome.xml @ 3:4fe92af4542b draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af

2:a8f207b43f64

<tool id="homer_findMotifsGenome" name="findMotifsGenome" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05" license="MIT">
    <description/>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="xrefs"/>

#end if
        ]]></command>
    <inputs>
        <param name="input" type="data" format="bed,encodepeak,tabular" label="Peak file"/>
        <conditional name="genome">
            <param name="source" type="select" label="Will you select a reference genome from your history or use a installed genome?">
                <option value="preparsed">Preparsed (fasta is available and has been preparsed to specific size)</option>
                <option value="installed">Installed (fasta is available but will be preparsed as run time)</option>
                <option value="history">From History (fasta will be preparsed at run time)</option>
            </param>
            <when value="preparsed">

3:4fe92af4542b

<tool id="homer_findMotifsGenome" name="findMotifsGenome" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@" license="MIT">
    <description/>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="xrefs"/>

#end if
        ]]></command>
    <inputs>
        <param name="input" type="data" format="bed,encodepeak,tabular" label="Peak file"/>
        <conditional name="genome">
            <param name="source" type="select" label="Will you select a reference genome from your history or use an installed genome?">
                <option value="preparsed">Preparsed (fasta is available and has been preparsed to specific size)</option>
                <option value="installed">Installed (fasta is available but will be preparsed as run time)</option>
                <option value="history">From History (fasta will be preparsed at run time)</option>
            </param>
            <when value="preparsed">