comparison macros.xml @ 0:ec974e69e0b5 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
author iuc
date Sun, 08 Aug 2021 11:02:42 +0000
parents
children 3126da33847c
comparison
equal deleted inserted replaced
-1:000000000000 0:ec974e69e0b5
1 <macros>
2 <token name="@TOOL_VERSION@">4.11</token>
3 <!-- HOMER index version compatible with this version of HOMER
4 This is the HOMER version that introduced the preparsed structure expected
5 by the current version. -->
6 <token name="@IDX_VERSION@">4.11</token>
7 <token name="@VERSION_SUFFIX@">0</token>
8 <xml name="xrefs">
9 <xrefs>
10 <xref type="bio.tools">homer</xref>
11 </xrefs>
12 </xml>
13 <xml name="requirements">
14 <requirements>
15 <requirement type="package" version="4.11">homer</requirement>
16 </requirements>
17 </xml>
18 <xml name="choose_center">
19 <conditional name="choose_center">
20 <param name="center" type="select" label="Do you want to center your sequence on the peak center?">
21 <option value="centered" selected="True">Yes</option>
22 <option value="manual">No, I want asymetric (raise an error if given was chosen above)</option>
23 </param>
24 <when value="centered"/>
25 <when value="manual">
26 <param name="sizes" type="integer" value="-100" label="sequence start relative to center"/>
27 </when>
28 </conditional>
29 </xml>
30 <xml name="mask_size">
31 <param argument="-mask" type="boolean" truevalue="True" falsevalue="False" label="mask repeats/lower case sequence"/>
32 <conditional name="fixed_size">
33 <param name="size_fixed" type="select" label="Do you want a fixed fragment size?">
34 <option value="fixed" selected="True">Yes</option>
35 <option value="given">No, I want to keep the size of my peaks (-size given)</option>
36 </param>
37 <when value="given"/>
38 <when value="fixed">
39 <param argument="-size" type="integer" min="0" value="200" label="fragment size in bp"/>
40 <expand macro="choose_center"/>
41 </when>
42 </conditional>
43 </xml>
44 <xml name="citation">
45 <citations>
46 <citation type="doi">10.1016/j.molcel.2010.05.004</citation>
47 </citations>
48 </xml>
49 </macros>