Mercurial > repos > iuc > homer_findmotifsgenome
comparison macros.xml @ 0:ec974e69e0b5 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
author | iuc |
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date | Sun, 08 Aug 2021 11:02:42 +0000 |
parents | |
children | 3126da33847c |
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-1:000000000000 | 0:ec974e69e0b5 |
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1 <macros> | |
2 <token name="@TOOL_VERSION@">4.11</token> | |
3 <!-- HOMER index version compatible with this version of HOMER | |
4 This is the HOMER version that introduced the preparsed structure expected | |
5 by the current version. --> | |
6 <token name="@IDX_VERSION@">4.11</token> | |
7 <token name="@VERSION_SUFFIX@">0</token> | |
8 <xml name="xrefs"> | |
9 <xrefs> | |
10 <xref type="bio.tools">homer</xref> | |
11 </xrefs> | |
12 </xml> | |
13 <xml name="requirements"> | |
14 <requirements> | |
15 <requirement type="package" version="4.11">homer</requirement> | |
16 </requirements> | |
17 </xml> | |
18 <xml name="choose_center"> | |
19 <conditional name="choose_center"> | |
20 <param name="center" type="select" label="Do you want to center your sequence on the peak center?"> | |
21 <option value="centered" selected="True">Yes</option> | |
22 <option value="manual">No, I want asymetric (raise an error if given was chosen above)</option> | |
23 </param> | |
24 <when value="centered"/> | |
25 <when value="manual"> | |
26 <param name="sizes" type="integer" value="-100" label="sequence start relative to center"/> | |
27 </when> | |
28 </conditional> | |
29 </xml> | |
30 <xml name="mask_size"> | |
31 <param argument="-mask" type="boolean" truevalue="True" falsevalue="False" label="mask repeats/lower case sequence"/> | |
32 <conditional name="fixed_size"> | |
33 <param name="size_fixed" type="select" label="Do you want a fixed fragment size?"> | |
34 <option value="fixed" selected="True">Yes</option> | |
35 <option value="given">No, I want to keep the size of my peaks (-size given)</option> | |
36 </param> | |
37 <when value="given"/> | |
38 <when value="fixed"> | |
39 <param argument="-size" type="integer" min="0" value="200" label="fragment size in bp"/> | |
40 <expand macro="choose_center"/> | |
41 </when> | |
42 </conditional> | |
43 </xml> | |
44 <xml name="citation"> | |
45 <citations> | |
46 <citation type="doi">10.1016/j.molcel.2010.05.004</citation> | |
47 </citations> | |
48 </xml> | |
49 </macros> |