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comparison test-data/motif_test1/homerResults/motif4.similar.html @ 0:ec974e69e0b5 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
author iuc
date Sun, 08 Aug 2021 11:02:42 +0000
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1 <HTML><HEAD><TITLE>motif4</TITLE></HEAD>
2 <H2>Information for motif4</H2>
3 <svg width="305" height="50">
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67 <BR/>
68 Reverse Opposite:<BR/><svg width="305" height="50">
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130 </g>
131 </svg>
132 <BR/>
133 <TABLE border="1" cellpading="0" cellspacing="0">
134 <TR><TD>p-value:</TD><TD>1e-1</TD></TR>
135 <TR><TD>log p-value:</TD><TD>-2.912e+00</TD></TR>
136 <TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR>
137 <TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR>
138 <TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR>
139 <TR><TD>Number of Background Sequences with motif</TD><TD>218.1</TD></TR>
140 <TR><TD>Percentage of Background Sequences with motif</TD><TD>5.44%</TD></TR>
141 <TR><TD>Average Position of motif in Targets</TD><TD>180.0 +/- 0.0bp</TD></TR>
142 <TR><TD>Average Position of motif in Background</TD><TD>95.7 +/- 83.7bp</TD></TR>
143 <TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR>
144 <TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR>
145 <TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif4.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif4RV.motif">reverse opposite</A></TD></TR>
146 </TABLE>
147 <H3>Similar de novo motifs found</H3>
148 <TABLE border="1" cellpading="0" cellspacing="0">
149 <TR><TD>Rank</TD><TD>Match Score</TD><TD>Redundant Motif</TD><TD>P-value</TD><TD>log P-value</TD><TD>% of Targets</TD><TD>% of Background</TD><TD>Motif file</TD></TR>
150 <TR><TD>1</TD><TD>0.913</TD><TD><svg width="255" height="50">
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204
205 </TD><TD>1e-1</TD><TD>-2.902420</TD><TD>100.00%</TD><TD>5.49%</TD><TD><A target="_blank" HREF="motif4.similar1.motif">motif file (matrix)</A></TD></TR>
206 <TR><TD>2</TD><TD>0.714</TD><TD><svg width="205" height="50">
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241 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,150,34)">G</text>
242
243 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,175,49)">C</text>
244 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,175,44)">G</text>
245 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,176,39)">T</text>
246 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,177,34)">A</text>
247
248 </g>
249 </svg>
250
251 </TD><TD>1e-1</TD><TD>-2.897885</TD><TD>100.00%</TD><TD>5.54%</TD><TD><A target="_blank" HREF="motif4.similar2.motif">motif file (matrix)</A></TD></TR>
252 </TABLE>
253 <P></P>
254 </BODY></HTML>