diff test-data/annotations_default.txt @ 0:ec974e69e0b5 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/annotations_default.txt	Sun Aug 08 11:02:42 2021 +0000
@@ -0,0 +1,115 @@
+Intergenic	chr2	1	74667309	+	N	1900000000
+promoter-TSS (ENSMUST00000001872)	chr2	74667310	74668410	+	P	1
+exon (ENSMUST00000001872, exon 1 of 2)	chr2	74668411	74669078	+	E	59
+intron (ENSMUST00000001872, intron 1 of 1)	chr2	74669079	74669885	+	I	158
+exon (ENSMUST00000001872, exon 2 of 2)	chr2	74669886	74670136	+	E	61
+3' UTR (ENSMUST00000001872, exon 2 of 2)	chr2	74670137	74671498	+	3UTR	60
+TTS (ENSMUST00000001872)	chr2	74671499	74672599	+	TTS	30
+Intergenic--2	chr2	74672600	74674012	+	N	1900000000
+promoter-TSS (ENSMUST00000001878)	chr2	74674013	74675113	+	P	2
+exon (ENSMUST00000001878, exon 1 of 2)	chr2	74675114	74675654	+	E	63
+intron (ENSMUST00000001878, intron 1 of 1)	chr2	74675655	74675813	+	I	158
+exon (ENSMUST00000001878, exon 2 of 2)	chr2	74675814	74676052	+	E	65
+3' UTR (ENSMUST00000001878, exon 2 of 2)	chr2	74676053	74677604	+	3UTR	64
+TTS (ENSMUST00000001878)	chr2	74677605	74678556	+	TTS	31
+promoter-TSS (ENSMUST00000048086)	chr2	74678557	74679657	+	P	6
+exon (ENSMUST00000048086, exon 1 of 2)	chr2	74679658	74679809	+	E	83
+intron (ENSMUST00000048086, intron 1 of 1)	chr2	74679810	74681322	+	I	158
+promoter-TSS (ENSMUST00000142312)	chr2	74681323	74682423	+	P	20
+exon (ENSMUST00000142312, exon 1 of 2)	chr2	74682424	74682445	+	E	131
+promoter-TSS (ENSMUST00000136302)	chr2	74682446	74683546	+	P	17
+intron (ENSMUST00000136302, intron 1 of 2)	chr2	74683547	74683902	+	I	158
+exon (ENSMUST00000048086, exon 2 of 2)	chr2	74683903	74684067	+	E	84
+TTS (ENSMUST00000142312)	chr2	74684068	74685168	+	TTS	49
+intron (ENSMUST00000136302, intron 2 of 2)	chr2	74684357	74685168	+	I	158
+exon (ENSMUST00000048086, exon 2 of 2)--2	chr2	74685169	74686915	+	E	84
+TTS (ENSMUST00000048086)	chr2	74686916	74688016	+	TTS	35
+intron (ENSMUST00000136302, intron 2 of 2)--2	chr2	74688017	74690923	+	I	158
+promoter-TSS (ENSMUST00000061745)	chr2	74690924	74692024	+	P	9
+exon (ENSMUST00000061745, exon 1 of 2)	chr2	74692025	74692724	+	E	96
+intron (ENSMUST00000061745, intron 1 of 1)	chr2	74692725	74694090	+	I	158
+exon (ENSMUST00000061745, exon 2 of 2)	chr2	74694091	74694093	+	E	98
+TTS (ENSMUST00000136302)	chr2	74694094	74694519	+	TTS	46
+promoter-TSS (ENSMUST00000126966)	chr2	74694520	74695620	+	P	15
+promoter-TSS (ENSMUST00000152027)	chr2	74695621	74695701	+	P	25
+TTS (ENSMUST00000061745)	chr2	74695702	74696105	+	TTS	38
+TTS (ENSMUST00000190845)	chr2	74696106	74696726	-	TTS	57
+promoter-TSS (ENSMUST00000059272)	chr2	74696727	74697827	+	P	8
+promoter-TSS (ENSMUST00000190845)	chr2	74697828	74698586	-	P	28
+exon (ENSMUST00000059272, exon 1 of 2)	chr2	74698587	74698833	+	E	92
+intron (ENSMUST00000059272, intron 1 of 1)	chr2	74698834	74699179	+	I	158
+exon (ENSMUST00000059272, exon 2 of 2)	chr2	74699180	74699421	+	E	94
+3' UTR (ENSMUST00000059272, exon 2 of 2)	chr2	74699422	74700005	+	3UTR	93
+TTS (ENSMUST00000198895)	chr2	74700006	74700107	-	TTS	58
+TTS (ENSMUST00000059272)	chr2	74700108	74701041	+	TTS	37
+promoter-TSS (ENSMUST00000198895)	chr2	74701042	74702142	-	P	29
+Intergenic--3	chr2	74702143	74702247	+	N	1900000000
+TTS (ENSMUST00000132326)	chr2	74702248	74703348	-	TTS	45
+exon (ENSMUST00000132326, exon 2 of 2)	chr2	74703349	74703614	-	E	120
+promoter-TSS (ENSMUST00000151380)	chr2	74703615	74703904	+	P	24
+promoter-TSS (ENSMUST00000019749)	chr2	74703905	74705005	+	P	3
+promoter-TSS (ENSMUST00000074721)	chr2	74705006	74705252	+	P	10
+5' UTR (ENSMUST00000019749, exon 1 of 2)	chr2	74705253	74705547	+	5UTR	66
+exon (ENSMUST00000019749, exon 1 of 2)	chr2	74705548	74706118	+	E	67
+intron (ENSMUST00000074721, intron 1 of 1)	chr2	74706119	74706513	+	I	158
+exon (ENSMUST00000019749, exon 2 of 2)	chr2	74706514	74706711	+	E	69
+TTS (ENSMUST00000151380)	chr2	74706712	74707206	+	TTS	53
+TTS (ENSMUST00000074721)	chr2	74707207	74707832	+	TTS	39
+TTS (ENSMUST00000019749)	chr2	74707833	74708933	+	TTS	32
+intron (ENSMUST00000132326, intron 1 of 1)	chr2	74708934	74709042	-	I	158
+TTS (ENSMUST00000156342)	chr2	74709043	74709192	-	TTS	55
+TTS (ENSMUST00000145799)	chr2	74709193	74710293	-	TTS	52
+intron (ENSMUST00000145799, intron 2 of 2)	chr2	74710294	74710926	-	I	158
+promoter-TSS (ENSMUST00000111983)	chr2	74710927	74712027	+	P	14
+promoter-TSS (ENSMUST00000132326)	chr2	74712028	74713054	-	P	16
+promoter-TSS (ENSMUST00000156342)	chr2	74713055	74713526	-	P	26
+exon (ENSMUST00000139005, exon 2 of 2)	chr2	74713527	74714401	-	E	125
+intron (ENSMUST00000145799, intron 1 of 2)	chr2	74714402	74715705	-	I	158
+exon (ENSMUST00000139005, exon 1 of 2)	chr2	74715706	74715895	-	E	126
+promoter-TSS (ENSMUST00000145799)	chr2	74715896	74716029	-	P	23
+promoter-TSS (ENSMUST00000139005)	chr2	74716030	74717130	-	P	18
+intron (ENSMUST00000111983, intron 1 of 2)	chr2	74717131	74720977	+	I	158
+promoter-TSS (ENSMUST00000047904)	chr2	74720978	74722078	+	P	5
+5' UTR (ENSMUST00000047904, exon 1 of 6)	chr2	74722079	74722177	+	5UTR	75
+intron (ENSMUST00000047904, intron 1 of 5)	chr2	74722178	74722552	+	I	158
+5' UTR (ENSMUST00000047904, exon 2 of 6)	chr2	74722553	74722631	+	5UTR	76
+intron (ENSMUST00000144040, intron 2 of 6)	chr2	74722632	74723331	+	I	158
+5' UTR (ENSMUST00000047904, exon 3 of 6)	chr2	74723332	74723367	+	5UTR	77
+intron (ENSMUST00000144040, intron 3 of 6)	chr2	74723368	74725069	+	I	158
+promoter-TSS (ENSMUST00000083566)	chr2	74725070	74725727	+	P	11
+promoter-TSS (ENSMUST00000053932)	chr2	74725728	74726828	+	P	7
+promoter-TSS (ENSMUST00000111980)	chr2	74726829	74727174	+	P	12
+5' UTR (ENSMUST00000047904, exon 5 of 6)	chr2	74727175	74727278	+	5UTR	79
+exon (ENSMUST00000047904, exon 5 of 6)	chr2	74727279	74727705	+	E	80
+intron (ENSMUST00000053932, intron 1 of 3)	chr2	74727706	74728261	+	I	158
+exon (ENSMUST00000047904, exon 6 of 6)	chr2	74728262	74728587	+	E	82
+3' UTR (ENSMUST00000047904, exon 6 of 6)	chr2	74728588	74728767	+	3UTR	81
+TTS (ENSMUST00000144040)	chr2	74728768	74729022	+	TTS	50
+TTS (ENSMUST00000111980)	chr2	74729023	74729059	+	TTS	41
+TTS (ENSMUST00000047904)	chr2	74729060	74730160	+	TTS	34
+intron (ENSMUST00000053932, intron 2 of 3)	chr2	74730161	74731912	+	I	158
+promoter-TSS (ENSMUST00000144544)	chr2	74731913	74733013	+	P	22
+5' UTR (ENSMUST00000144544, exon 1 of 2)	chr2	74733014	74733040	+	5UTR	141
+intron (ENSMUST00000144544, intron 1 of 1)	chr2	74733041	74735514	+	I	158
+promoter-TSS (ENSMUST00000111982)	chr2	74735515	74736615	+	P	13
+5' UTR (ENSMUST00000111982, exon 1 of 3)	chr2	74736616	74736705	+	5UTR	108
+intron (ENSMUST00000111982, intron 1 of 2)	chr2	74736706	74738618	+	I	158
+promoter-TSS (ENSMUST00000047830)	chr2	74738619	74739719	+	P	4
+intron (ENSMUST00000047830, intron 1 of 2)	chr2	74739720	74743927	+	I	158
+5' UTR (ENSMUST00000047830, exon 2 of 3)	chr2	74743928	74744011	+	5UTR	71
+exon (ENSMUST00000047830, exon 2 of 3)	chr2	74744012	74744113	+	E	72
+TTS (ENSMUST00000144544)	chr2	74744114	74744673	+	TTS	51
+promoter-TSS (ENSMUST00000140666)	chr2	74744674	74745774	+	P	19
+promoter-TSS (ENSMUST00000190553)	chr2	74745775	74745822	+	P	27
+5' UTR (ENSMUST00000140666, exon 1 of 2)	chr2	74745823	74746156	+	5UTR	127
+exon (ENSMUST00000140666, exon 1 of 2)	chr2	74746157	74746220	+	E	128
+exon (ENSMUST00000190553, exon 1 of 1)	chr2	74746221	74746321	+	E	155
+exon (ENSMUST00000047830, exon 3 of 3)	chr2	74746322	74746495	+	E	74
+TTS (ENSMUST00000140666)	chr2	74746496	74747596	+	TTS	48
+3' UTR (ENSMUST00000111983, exon 3 of 3)	chr2	74747080	74747799	+	3UTR	116
+3' UTR (ENSMUST00000047830, exon 3 of 3)	chr2	74747597	74747799	+	3UTR	73
+TTS (ENSMUST00000047830)	chr2	74747800	74748900	+	TTS	33
+TTS (ENSMUST00000053932)	chr2	74748901	74748918	+	TTS	36
+TTS (ENSMUST00000111983)	chr2	74748919	74749271	+	TTS	43
+TTS (ENSMUST00000190553)	chr2	74749272	74749442	+	TTS	56
+Intergenic--4	chr2	74749443	1500000000	+	N	1900000000