Mercurial > repos > iuc > homer_findmotifsgenome

diff test-data/motif_test1/homerResults/motif1.info.html @ 0:ec974e69e0b5 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
author: iuc
date: Sun, 08 Aug 2021 11:02:42 +0000
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/motif_test1/homerResults/motif1.info.html	Sun Aug 08 11:02:42 2021 +0000
@@ -0,0 +1,1753 @@
+<HTML><HEAD><TITLE>Motif 1</TITLE></HEAD>
+<H2>Information for 1-ATGAGCTTAATC (Motif 1)</H2>
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+<TABLE border="1" cellpading="0" cellspacing="0">
+<TR><TD>p-value:</TD><TD>1e-1</TD></TR>
+<TR><TD>log p-value:</TD><TD>-2.921e+00</TD></TR>
+<TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR>
+<TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR>
+<TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR>
+<TR><TD>Number of Background Sequences with motif</TD><TD>216.0</TD></TR>
+<TR><TD>Percentage of Background Sequences with motif</TD><TD>5.39%</TD></TR>
+<TR><TD>Average Position of motif in Targets</TD><TD>105.0 +/- 0.0bp</TD></TR>
+<TR><TD>Average Position of motif in Background</TD><TD>97.7 +/- 71.4bp</TD></TR>
+<TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR>
+<TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR>
+<TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif1.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif1RV.motif">reverse opposite</A></TD></TR>
+<TR><TD>SVG Files for Logos:</TD><TD><A HREF="motif1.logo.svg">forward logo</A><BR/><A HREF="motif1RV.logo.svg">reverse opposite</A></TD></TR>
+</TABLE>
+<H3>Matches to Known Motifs</H3>
+<TABLE border="1" cellpading="0" cellspacing="0">
+<TR><TD>
+<H4>Oc/dmmpmm(Noyes_hd)/fly</H4>
+<TABLE><TR><TD>
+<TABLE>
+<TR><TD>Match Rank:</TD><TD>1</TD></TR>
+<TR><TD>Score:</TD><TD>0.65</TD</TR>
+<TR><TD>Offset:</TD><TD>4</TD</TR>
+<TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
+<TR><TD>Alignment:</TD><TD><FONT face="courier">ATGAGCTTAATC--</FONT><BR><FONT face="courier">----NNTTAATCCN</FONT></TD></TR></TABLE>
+</TD><TD>
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+<TR><TD>
+<H4>PHO2(MacIsaac)/Yeast</H4>
+<TABLE><TR><TD>
+<TABLE>
+<TR><TD>Match Rank:</TD><TD>2</TD></TR>
+<TR><TD>Score:</TD><TD>0.65</TD</TR>
+<TR><TD>Offset:</TD><TD>5</TD</TR>
+<TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
+<TR><TD>Alignment:</TD><TD><FONT face="courier">ATGAGCTTAATC</FONT><BR><FONT face="courier">-----CTTAAT-</FONT></TD></TR></TABLE>
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+<TR><TD>
+<H4>oc/dmmpmm(Noyes)/fly</H4>
+<TABLE><TR><TD>
+<TABLE>
+<TR><TD>Match Rank:</TD><TD>3</TD></TR>
+<TR><TD>Score:</TD><TD>0.65</TD</TR>
+<TR><TD>Offset:</TD><TD>6</TD</TR>
+<TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
+<TR><TD>Alignment:</TD><TD><FONT face="courier">ATGAGCTTAATC-</FONT><BR><FONT face="courier">------TTAATCC</FONT></TD></TR></TABLE>
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+<TR><TD>
+<H4>Gsc/dmmpmm(Noyes_hd)/fly</H4>
+<TABLE><TR><TD>
+<TABLE>
+<TR><TD>Match Rank:</TD><TD>4</TD></TR>
+<TR><TD>Score:</TD><TD>0.64</TD</TR>
+<TR><TD>Offset:</TD><TD>4</TD</TR>
+<TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
+<TR><TD>Alignment:</TD><TD><FONT face="courier">ATGAGCTTAATC--</FONT><BR><FONT face="courier">----NNTTAATCCN</FONT></TD></TR></TABLE>
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+<TR><TD>
+<H4>bcd/dmmpmm(Noyes_hd)/fly</H4>
+<TABLE><TR><TD>
+<TABLE>
+<TR><TD>Match Rank:</TD><TD>5</TD></TR>
+<TR><TD>Score:</TD><TD>0.64</TD</TR>
+<TR><TD>Offset:</TD><TD>4</TD</TR>
+<TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
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+<TR><TD>
+<H4>OTX2/MA0712.1/Jaspar</H4>
+<TABLE><TR><TD>
+<TABLE>
+<TR><TD>Match Rank:</TD><TD>6</TD></TR>
+<TR><TD>Score:</TD><TD>0.64</TD</TR>
+<TR><TD>Offset:</TD><TD>6</TD</TR>
+<TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
+<TR><TD>Alignment:</TD><TD><FONT face="courier">ATGAGCTTAATC--</FONT><BR><FONT face="courier">------TTAATCCT</FONT></TD></TR></TABLE>
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+</TD></TR>
+<TR><TD>
+<H4>OTX1/MA0711.1/Jaspar</H4>
+<TABLE><TR><TD>
+<TABLE>
+<TR><TD>Match Rank:</TD><TD>7</TD></TR>
+<TR><TD>Score:</TD><TD>0.63</TD</TR>
+<TR><TD>Offset:</TD><TD>6</TD</TR>
+<TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
+<TR><TD>Alignment:</TD><TD><FONT face="courier">ATGAGCTTAATC--</FONT><BR><FONT face="courier">------TTAATCCG</FONT></TD></TR></TABLE>
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+<TR><TD>
+<H4>ESRRB/MA0141.3/Jaspar</H4>
+<TABLE><TR><TD>
+<TABLE>
+<TR><TD>Match Rank:</TD><TD>8</TD></TR>
+<TR><TD>Score:</TD><TD>0.63</TD</TR>
+<TR><TD>Offset:</TD><TD>-1</TD</TR>
+<TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
+<TR><TD>Alignment:</TD><TD><FONT face="courier">-ATGAGCTTAATC</FONT><BR><FONT face="courier">NATGACCTTGA--</FONT></TD></TR></TABLE>
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+<H4>GSC2/MA0891.1/Jaspar</H4>
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+<H4>Pitx1/MA0682.1/Jaspar</H4>
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