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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e6639e130c5bf50f489dd09e38a1cbc712280fff
author iuc
date Fri, 07 Apr 2023 15:01:41 +0000
parents 4fe92af4542b
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<HTML><HEAD><TITLE>.// - Homer de novo Motif Results</TITLE></HEAD>
<BODY>
<H1>Homer <i>de novo</i> Motif Results (.//)</H1>
<A HREF="knownResults.html">Known Motif Enrichment Results</A><BR/>
<A HREF="geneOntology.html">Gene Ontology Enrichment Results</A><BR/>
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into 
<A HREF="http://www.benoslab.pitt.edu/stamp/">STAMP</A><BR/>
More information on motif finding results: <A HREF="http://biowhat.ucsd.edu/homer/">HOMER</A>
 | <A HREF="http://biowhat.ucsd.edu/homer/motif/index.html">Description of Results</A>
 | <A HREF="http://biowhat.ucsd.edu/homer/motif/practicalTips.html">Tips</A>
<BR/>
Total target sequences = 15<BR/>
Total background sequences = 68<BR/>
<FONT color="red">* - possible false positive</FONT><BR/>
<TABLE border="1" cellpading="0" cellspacing="0">
<TR><TD>Rank</TD><TD>Motif</TD><TD>P-value</TD><TD>log P-pvalue</TD><TD>% of Targets</TD><TD>% of Background</TD>
<TD>STD(Bg STD)</TD>
<TD>Best Match/Details</TD><TD>Motif File</TD></TR>
<TR><TD>1
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</TD><TD>1e-5</TD><TD>-1.200e+01</TD><TD>53.33%</TD><TD>2.94%</TD><TD>111.3bp (46.0bp)</TD><TD>Unknown6/Drosophila-Promoters/Homer(0.818)<BR/><A target="_blank" HREF="homerResults/motif1.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif1.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif1.motif">motif file (matrix)</A></TD></TR>
<TR><TD>2
<FONT color="red">*</FONT></TD><TD><svg width="205" height="50">
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</TD><TD>1e-4</TD><TD>-1.139e+01</TD><TD>46.67%</TD><TD>1.47%</TD><TD>122.7bp (0.0bp)</TD><TD>NAC078/MA1677.1/Jaspar(0.916)<BR/><A target="_blank" HREF="homerResults/motif2.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif2.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif2.motif">motif file (matrix)</A></TD></TR>
<TR><TD>3
<FONT color="red">*</FONT></TD><TD><svg width="255" height="50">
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</TD><TD>1e-3</TD><TD>-9.177e+00</TD><TD>33.33%</TD><TD>0.00%</TD><TD>121.8bp (0.0bp)</TD><TD>PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer(0.746)<BR/><A target="_blank" HREF="homerResults/motif3.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif3.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif3.motif">motif file (matrix)</A></TD></TR>
<TR><TD>4
<FONT color="red">*</FONT></TD><TD><svg width="305" height="50">
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  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,175,48.95)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,176,48.9)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.997,177,48.85)">A</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,200,49)">C</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,201,48.95)">T</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.132,200,48.9)">G</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.866,202,42.3)">A</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,225,49)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,225,48.95)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.132,226,48.9)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.866,227,42.3)">A</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,250,49)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,250,48.95)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,251,48.9)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.997,252,48.85)">A</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,275,49)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,275,48.95)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,276,48.9)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.997,277,48.85)">A</text>
  
 </g>
</svg>
</TD><TD>1e-3</TD><TD>-9.067e+00</TD><TD>66.67%</TD><TD>14.71%</TD><TD>114.1bp (83.7bp)</TD><TD>HuR(RRM)/Homo_sapiens-RNCMPT00274-PBM/HughesRNA(0.794)<BR/><A target="_blank" HREF="homerResults/motif4.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif4.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif4.motif">motif file (matrix)</A></TD></TR>
<TR><TD>5
<FONT color="red">*</FONT></TD><TD><svg width="255" height="50">
 <g font-family="Arial" font-weight="bold" font-size="66.5">
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,0,49)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,0,48.95)">G</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.179,2,48.9)">A</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.819,1,39.95)">T</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.001,27,49)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,25,48.95)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,25,48.9)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.997,26,48.85)">T</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.001,52,49)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,50,48.95)">C</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,51,48.9)">T</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.997,50,48.85)">G</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,75,49)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,75,48.95)">G</text>
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  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.819,77,39.95)">A</text>
  
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,100,49)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,101,48.95)">T</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.179,100,48.9)">C</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.819,102,39.95)">A</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.001,127,49)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.180,125,48.95)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.244,125,39.95)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.575,126,27.75)">T</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,150,49)">C</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,151,48.95)">T</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.179,150,48.9)">G</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.819,152,39.95)">A</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,175,49)">C</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,176,48.95)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.197,177,48.9)">A</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.801,175,39.05)">G</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,200,49)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,200,48.95)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.261,201,48.9)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.737,202,35.85)">A</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,225,49)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,225,48.95)">G</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.360,227,48.9)">A</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.638,226,30.9)">T</text>
  
 </g>
</svg>
</TD><TD>1e-3</TD><TD>-8.883e+00</TD><TD>46.67%</TD><TD>4.41%</TD><TD>69.4bp (85.9bp)</TD><TD>PB0068.1_Sox1_1/Jaspar(0.716)<BR/><A target="_blank" HREF="homerResults/motif5.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif5.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif5.motif">motif file (matrix)</A></TD></TR>
<TR><TD>6
<FONT color="red">*</FONT></TD><TD><svg width="305" height="50">
 <g font-family="Arial" font-weight="bold" font-size="66.5">
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.027,1,49)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.226,2,47.65)">A</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.308,0,36.35)">G</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.440,0,20.95)">C</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,25,49)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,25,48.95)">G</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.026,27,48.9)">A</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.972,26,47.6)">T</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,50,49)">C</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,51,48.95)">T</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.026,50,48.9)">G</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.972,52,47.6)">A</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,75,49)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,75,48.95)">G</text>
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  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.001,102,49)">A</text>
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  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.220,125,49)">C</text>
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  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,150,49)">C</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,151,48.95)">T</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.219,150,48.9)">G</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.779,152,37.95)">A</text>
  
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,175,49)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.225,176,48.95)">T</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.246,175,37.7)">C</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.528,177,25.4)">A</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.001,202,49)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,200,48.95)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,200,48.9)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.997,201,48.85)">T</text>
  
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,225,49)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.220,226,48.95)">T</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.225,225,37.95)">C</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.554,227,26.7)">A</text>
  
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,250,49)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.026,251,48.95)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.091,252,47.65)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.882,250,43.1)">C</text>
  
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,276,49)">T</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.026,275,48.95)">G</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.220,275,47.65)">C</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.753,277,36.65)">A</text>
  
 </g>
</svg>
</TD><TD>1e-3</TD><TD>-8.111e+00</TD><TD>40.00%</TD><TD>2.94%</TD><TD>66.2bp (36.0bp)</TD><TD>HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer(0.716)<BR/><A target="_blank" HREF="homerResults/motif6.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif6.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif6.motif">motif file (matrix)</A></TD></TR>
<TR><TD>7
<FONT color="red">*</FONT></TD><TD><svg width="205" height="50">
 <g font-family="Arial" font-weight="bold" font-size="66.5">
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.001,2,49)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,0,48.95)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,0,48.9)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.997,1,48.85)">T</text>
  
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,25,49)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.117,26,48.95)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.335,27,43.1)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.547,25,26.35)">C</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,50,49)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,50,48.95)">G</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.405,52,48.9)">A</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.593,51,28.65)">T</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,75,49)">C</text>
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  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.302,76,48.9)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.696,77,33.8)">A</text>
  
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,101,49)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.010,102,48.95)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.020,100,48.45)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.969,100,47.45)">G</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.001,127,49)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,125,48.95)">C</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,126,48.9)">T</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.997,125,48.85)">G</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.001,152,49)">A</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,150,48.95)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,151,48.9)">T</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.997,150,48.85)">C</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,175,49)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,175,48.95)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,176,48.9)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.997,177,48.85)">A</text>
  
 </g>
</svg>
</TD><TD>1e-3</TD><TD>-8.111e+00</TD><TD>40.00%</TD><TD>2.94%</TD><TD>117.4bp (108.5bp)</TD><TD>MOT3/MA0340.1/Jaspar(0.778)<BR/><A target="_blank" HREF="homerResults/motif7.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif7.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif7.motif">motif file (matrix)</A></TD></TR>
<TR><TD>8
<FONT color="red">*</FONT></TD><TD><svg width="255" height="50">
 <g font-family="Arial" font-weight="bold" font-size="66.5">
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  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,1,48.95)">T</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.439,0,48.9)">C</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.559,2,26.95)">A</text>
  
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,25,49)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,26,48.95)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.279,27,48.9)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.719,25,34.95)">C</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,50,49)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,50,48.95)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,51,48.9)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.997,52,48.85)">A</text>
  
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,75,49)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,76,48.95)">T</text>
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  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,100,49)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,100,48.95)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,101,48.9)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.997,102,48.85)">A</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,125,49)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,125,48.95)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,126,48.9)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.997,127,48.85)">A</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.001,152,49)">A</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,151,48.95)">T</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.059,150,48.9)">G</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.939,150,45.95)">C</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.001,177,49)">A</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,175,48.95)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,176,48.9)">T</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.997,175,48.85)">C</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.001,202,49)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,200,48.95)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,200,48.9)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.997,201,48.85)">T</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,225,49)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,225,48.95)">G</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.339,227,48.9)">A</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.659,226,31.95)">T</text>
  
 </g>
</svg>
</TD><TD>1e-3</TD><TD>-7.498e+00</TD><TD>33.33%</TD><TD>1.47%</TD><TD>78.4bp (0.0bp)</TD><TD>Pp_0206(RRM)/Physcomitrella_patens-RNCMPT00206-PBM/HughesRNA(0.823)<BR/><A target="_blank" HREF="homerResults/motif8.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif8.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif8.motif">motif file (matrix)</A></TD></TR>
<TR><TD>9
<FONT color="red">*</FONT></TD><TD><svg width="205" height="50">
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  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.074,0,48.95)">C</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.147,1,45.25)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.778,2,37.9)">A</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.074,27,49)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.074,25,45.3)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.222,25,41.6)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.630,26,30.5)">T</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.060,50,49)">C</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.074,52,46)">A</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.172,51,42.3)">T</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.694,50,33.7)">G</text>
  
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,75,49)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.098,76,48.95)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.148,77,44.05)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.753,75,36.65)">C</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,100,49)">C</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.060,102,48.95)">A</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.221,101,45.95)">T</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.718,100,34.9)">G</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.001,127,49)">A</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.074,125,48.95)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.074,126,45.25)">T</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.851,125,41.55)">C</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,150,49)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,150,48.95)">G</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.073,152,48.9)">A</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.925,151,45.25)">T</text>
  
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.074,175,49)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.074,176,45.3)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.155,177,41.6)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.697,175,33.85)">C</text>
  
 </g>
</svg>
</TD><TD>1e-3</TD><TD>-7.368e+00</TD><TD>60.00%</TD><TD>14.71%</TD><TD>82.6bp (111.5bp)</TD><TD>ZC3H10(Znf)/Homo_sapiens-RNCMPT00085-PBM/HughesRNA(0.753)<BR/><A target="_blank" HREF="homerResults/motif9.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif9.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif9.motif">motif file (matrix)</A></TD></TR>
<TR><TD>10
<FONT color="red">*</FONT></TD><TD><svg width="305" height="50">
 <g font-family="Arial" font-weight="bold" font-size="66.5">
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  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,0,48.95)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,1,48.9)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.997,2,48.85)">A</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,25,49)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,25,48.95)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,26,48.9)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.997,27,48.85)">A</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,50,49)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,50,48.95)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.179,51,48.9)">T</text>
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  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,75,49)">G</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.180,75,48.95)">C</text>
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  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,100,49)">G</text>
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  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.018,125,49)">G</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.180,125,48.1)">C</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.198,126,39.1)">T</text>
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  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.001,152,49)">A</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.015,151,48.95)">T</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.228,150,48.2)">G</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.756,150,36.8)">C</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,175,49)">C</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,176,48.95)">T</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.014,175,48.9)">G</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.984,177,48.2)">A</text>
  
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,201,49)">T</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.015,200,48.95)">G</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.195,200,48.2)">C</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.789,202,38.45)">A</text>
  
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,225,49)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,226,48.95)">T</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.179,225,48.9)">C</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.819,227,39.95)">A</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,250,49)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,250,48.95)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,251,48.9)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.997,252,48.85)">A</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,275,49)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,275,48.95)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,276,48.9)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.997,277,48.85)">A</text>
  
 </g>
</svg>
</TD><TD>1e-3</TD><TD>-7.120e+00</TD><TD>40.00%</TD><TD>4.41%</TD><TD>82.9bp (107.9bp)</TD><TD>RLR1?/SacCer-Promoters/Homer(0.799)<BR/><A target="_blank" HREF="homerResults/motif10.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif10.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif10.motif">motif file (matrix)</A></TD></TR>
<TR><TD>11
<FONT color="red">*</FONT></TD><TD><svg width="205" height="50">
 <g font-family="Arial" font-weight="bold" font-size="66.5">
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.001,2,49)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.072,0,48.95)">C</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.325,1,45.35)">T</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.602,0,29.1)">G</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,25,49)">C</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.180,26,48.95)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.217,27,39.95)">A</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.602,25,29.1)">G</text>
  
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,50,49)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.010,51,48.95)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.108,52,48.45)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.881,50,43.05)">C</text>
  
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,76,49)">T</text>
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  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.674,75,32.7)">G</text>
  
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,100,49)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,101,48.95)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.009,102,48.9)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.989,100,48.45)">C</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.001,127,49)">A</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.001,125,48.95)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.001,126,48.9)">T</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.997,125,48.85)">C</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.010,150,49)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.109,150,48.5)">G</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.227,152,43.05)">A</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.654,151,31.7)">T</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.001,175,49)">C</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.118,176,48.95)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.217,177,43.05)">A</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.664,175,32.2)">G</text>
  
 </g>
</svg>
</TD><TD>1e-2</TD><TD>-5.714e+00</TD><TD>26.67%</TD><TD>1.47%</TD><TD>125.4bp (0.0bp)</TD><TD>brk/dmmpmm(Papatsenko)/fly(0.807)<BR/><A target="_blank" HREF="homerResults/motif11.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif11.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif11.motif">motif file (matrix)</A></TD></TR>
</TABLE>
<P></P>
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