Mercurial > repos > iuc > homer_gtf_to_annotations

view test-data/annotations_default_simplified.txt @ 2:396cf2c12173 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
author iuc
date Mon, 13 Dec 2021 15:15:14 +0000
parents 8ebb6520eef4
children
line wrap: on
line source

Intergenic	chr2	1	74667309	+	N	1900000000
promoter-TSS (ENSMUST00000001872)	chr2	74667310	74668410	+	P	1
exon (ENSMUST00000001872, exon 1 of 2)	chr2	74668411	74669078	+	E	33
intron (ENSMUST00000001872, intron 1 of 1)	chr2	74669079	74669885	+	I	88
exon (ENSMUST00000001872, exon 2 of 2)	chr2	74669886	74670136	+	E	35
3' UTR (ENSMUST00000001872, exon 2 of 2)	chr2	74670137	74671498	+	3UTR	34
TTS (ENSMUST00000001872)	chr2	74671499	74672599	+	TTS	17
Intergenic--2	chr2	74672600	74674012	+	N	1900000000
promoter-TSS (ENSMUST00000001878)	chr2	74674013	74675113	+	P	2
exon (ENSMUST00000001878, exon 1 of 2)	chr2	74675114	74675654	+	E	37
intron (ENSMUST00000001878, intron 1 of 1)	chr2	74675655	74675813	+	I	88
exon (ENSMUST00000001878, exon 2 of 2)	chr2	74675814	74676052	+	E	39
3' UTR (ENSMUST00000001878, exon 2 of 2)	chr2	74676053	74677604	+	3UTR	38
TTS (ENSMUST00000001878)	chr2	74677605	74678556	+	TTS	18
promoter-TSS (ENSMUST00000048086)	chr2	74678557	74679657	+	P	4
exon (ENSMUST00000048086, exon 1 of 2)	chr2	74679658	74679809	+	E	44
intron (ENSMUST00000048086, intron 1 of 1)	chr2	74679810	74681322	+	I	88
promoter-TSS (ENSMUST00000142312)	chr2	74681323	74682423	+	P	11
exon (ENSMUST00000142312, exon 1 of 2)	chr2	74682424	74682445	+	E	69
promoter-TSS (ENSMUST00000136302)	chr2	74682446	74683546	+	P	10
intron (ENSMUST00000136302, intron 1 of 2)	chr2	74683547	74683902	+	I	88
exon (ENSMUST00000048086, exon 2 of 2)	chr2	74683903	74684067	+	E	45
TTS (ENSMUST00000142312)	chr2	74684068	74685168	+	TTS	27
intron (ENSMUST00000136302, intron 2 of 2)	chr2	74684357	74685168	+	I	88
exon (ENSMUST00000048086, exon 2 of 2)--2	chr2	74685169	74686915	+	E	45
TTS (ENSMUST00000048086)	chr2	74686916	74688016	+	TTS	20
intron (ENSMUST00000136302, intron 2 of 2)--2	chr2	74688017	74690923	+	I	88
promoter-TSS (ENSMUST00000061745)	chr2	74690924	74692024	+	P	6
exon (ENSMUST00000061745, exon 1 of 2)	chr2	74692025	74692724	+	E	51
intron (ENSMUST00000061745, intron 1 of 1)	chr2	74692725	74694090	+	I	88
exon (ENSMUST00000061745, exon 2 of 2)	chr2	74694091	74694093	+	E	53
TTS (ENSMUST00000136302)	chr2	74694094	74694519	+	TTS	26
promoter-TSS (ENSMUST00000126966)	chr2	74694520	74695620	+	P	9
TTS (ENSMUST00000061745)	chr2	74695621	74696105	+	TTS	22
TTS (ENSMUST00000190845)	chr2	74696106	74696726	-	TTS	31
promoter-TSS (ENSMUST00000059272)	chr2	74696727	74697827	+	P	5
promoter-TSS (ENSMUST00000190845)	chr2	74697828	74698586	-	P	15
exon (ENSMUST00000059272, exon 1 of 2)	chr2	74698587	74698833	+	E	47
intron (ENSMUST00000059272, intron 1 of 1)	chr2	74698834	74699179	+	I	88
exon (ENSMUST00000059272, exon 2 of 2)	chr2	74699180	74699421	+	E	49
3' UTR (ENSMUST00000059272, exon 2 of 2)	chr2	74699422	74700005	+	3UTR	48
TTS (ENSMUST00000198895)	chr2	74700006	74700107	-	TTS	32
TTS (ENSMUST00000059272)	chr2	74700108	74701041	+	TTS	21
promoter-TSS (ENSMUST00000198895)	chr2	74701042	74702142	-	P	16
Intergenic--3	chr2	74702143	74703614	+	N	1900000000
promoter-TSS (ENSMUST00000151380)	chr2	74703615	74703904	+	P	14
promoter-TSS (ENSMUST00000019749)	chr2	74703905	74705005	+	P	3
promoter-TSS (ENSMUST00000074721)	chr2	74705006	74705252	+	P	7
5' UTR (ENSMUST00000019749, exon 1 of 2)	chr2	74705253	74705547	+	5UTR	40
exon (ENSMUST00000019749, exon 1 of 2)	chr2	74705548	74706118	+	E	41
intron (ENSMUST00000074721, intron 1 of 1)	chr2	74706119	74706513	+	I	88
exon (ENSMUST00000019749, exon 2 of 2)	chr2	74706514	74706711	+	E	43
TTS (ENSMUST00000151380)	chr2	74706712	74707206	+	TTS	30
TTS (ENSMUST00000074721)	chr2	74707207	74707832	+	TTS	23
TTS (ENSMUST00000019749)	chr2	74707833	74708933	+	TTS	19
Intergenic--4	chr2	74708934	74709192	+	N	1900000000
TTS (ENSMUST00000145799)	chr2	74709193	74710293	-	TTS	29
intron (ENSMUST00000145799, intron 2 of 2)	chr2	74710294	74710926	-	I	88
promoter-TSS (ENSMUST00000111983)	chr2	74710927	74712027	+	P	8
promoter-TSS (ENSMUST00000144040)	chr2	74712028	74712029	+	P	12
5' UTR (ENSMUST00000111983, exon 1 of 3)	chr2	74712030	74712316	+	5UTR	58
intron (ENSMUST00000111983, intron 1 of 2)	chr2	74712317	74714270	+	I	88
exon (ENSMUST00000145799, exon 2 of 3)	chr2	74714271	74714401	-	E	80
intron (ENSMUST00000145799, intron 1 of 2)	chr2	74714402	74715705	-	I	88
exon (ENSMUST00000145799, exon 1 of 3)	chr2	74715706	74715895	-	E	81
promoter-TSS (ENSMUST00000145799)	chr2	74715896	74716996	-	P	13
intron (ENSMUST00000111983, intron 1 of 2)--2	chr2	74716997	74722552	+	I	88
exon (ENSMUST00000144040, exon 2 of 7)	chr2	74722553	74722631	+	E	73
intron (ENSMUST00000144040, intron 2 of 6)	chr2	74722632	74723331	+	I	88
exon (ENSMUST00000144040, exon 3 of 7)	chr2	74723332	74723367	+	E	74
intron (ENSMUST00000144040, intron 3 of 6)	chr2	74723368	74725462	+	I	88
exon (ENSMUST00000144040, exon 4 of 7)	chr2	74725463	74725597	+	E	75
intron (ENSMUST00000144040, intron 4 of 6)	chr2	74725598	74725844	+	I	88
exon (ENSMUST00000144040, exon 5 of 7)	chr2	74725845	74725978	+	E	76
intron (ENSMUST00000144040, intron 5 of 6)	chr2	74725979	74726875	+	I	88
exon (ENSMUST00000144040, exon 6 of 7)	chr2	74726876	74726932	+	E	77
intron (ENSMUST00000144040, intron 6 of 6)	chr2	74726933	74728358	+	I	88
exon (ENSMUST00000144040, exon 7 of 7)	chr2	74728359	74728767	+	E	78
TTS (ENSMUST00000144040)	chr2	74728768	74729868	+	TTS	28
intron (ENSMUST00000111983, intron 1 of 2)--3	chr2	74729869	74743927	+	I	88
5' UTR (ENSMUST00000111983, exon 2 of 3)	chr2	74743928	74744011	+	5UTR	59
exon (ENSMUST00000111983, exon 2 of 3)	chr2	74744012	74744555	+	E	60
intron (ENSMUST00000111983, intron 2 of 2)	chr2	74744556	74746321	+	I	88
exon (ENSMUST00000111983, exon 3 of 3)	chr2	74746322	74747079	+	E	62
3' UTR (ENSMUST00000111983, exon 3 of 3)	chr2	74747080	74748170	+	3UTR	61
TTS (ENSMUST00000111983)	chr2	74748171	74749271	+	TTS	24
Intergenic--5	chr2	74749272	1500000000	+	N	1900000000