Mercurial > repos > iuc > homer_gtf_to_annotations
view test-data/annotations_exon_start.txt @ 2:396cf2c12173 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
author | iuc |
---|---|
date | Mon, 13 Dec 2021 15:15:14 +0000 |
parents | 8ebb6520eef4 |
children |
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Intergenic chr2 1 74667309 + N 1900000000 promoter-TSS (ENSMUST00000001872) chr2 74667310 74668410 + P 1 exon (ENSMUST00000001872, exon 1 of 2) chr2 74668411 74669078 + E 59 intron (ENSMUST00000001872, intron 1 of 1) chr2 74669079 74669885 + I 145 exon (ENSMUST00000001872, exon 2 of 2) chr2 74669886 74671498 + E 60 TTS (ENSMUST00000001872) chr2 74671499 74672599 + TTS 30 Intergenic--2 chr2 74672600 74674012 + N 1900000000 promoter-TSS (ENSMUST00000001878) chr2 74674013 74675113 + P 2 exon (ENSMUST00000001878, exon 1 of 2) chr2 74675114 74675654 + E 62 intron (ENSMUST00000001878, intron 1 of 1) chr2 74675655 74675813 + I 145 exon (ENSMUST00000001878, exon 2 of 2) chr2 74675814 74677604 + E 63 TTS (ENSMUST00000001878) chr2 74677605 74678556 + TTS 31 promoter-TSS (ENSMUST00000048086) chr2 74678557 74679657 + P 6 exon (ENSMUST00000048086, exon 1 of 2) chr2 74679658 74679809 + E 78 intron (ENSMUST00000048086, intron 1 of 1) chr2 74679810 74681322 + I 145 promoter-TSS (ENSMUST00000142312) chr2 74681323 74682423 + P 20 exon (ENSMUST00000142312, exon 1 of 2) chr2 74682424 74682445 + E 119 promoter-TSS (ENSMUST00000136302) chr2 74682446 74683546 + P 17 intron (ENSMUST00000136302, intron 1 of 2) chr2 74683547 74683902 + I 145 exon (ENSMUST00000048086, exon 2 of 2) chr2 74683903 74684067 + E 79 TTS (ENSMUST00000142312) chr2 74684068 74685168 + TTS 49 intron (ENSMUST00000136302, intron 2 of 2) chr2 74684357 74685168 + I 145 exon (ENSMUST00000048086, exon 2 of 2)--2 chr2 74685169 74686915 + E 79 TTS (ENSMUST00000048086) chr2 74686916 74688016 + TTS 35 intron (ENSMUST00000136302, intron 2 of 2)--2 chr2 74688017 74690923 + I 145 promoter-TSS (ENSMUST00000061745) chr2 74690924 74692024 + P 9 exon (ENSMUST00000061745, exon 1 of 2) chr2 74692025 74692724 + E 89 intron (ENSMUST00000061745, intron 1 of 1) chr2 74692725 74694090 + I 145 exon (ENSMUST00000061745, exon 2 of 2) chr2 74694091 74694093 + E 90 TTS (ENSMUST00000136302) chr2 74694094 74694519 + TTS 46 promoter-TSS (ENSMUST00000126966) chr2 74694520 74695620 + P 15 promoter-TSS (ENSMUST00000152027) chr2 74695621 74695701 + P 25 TTS (ENSMUST00000061745) chr2 74695702 74696105 + TTS 38 TTS (ENSMUST00000190845) chr2 74696106 74696726 - TTS 57 promoter-TSS (ENSMUST00000059272) chr2 74696727 74697827 + P 8 promoter-TSS (ENSMUST00000190845) chr2 74697828 74698586 - P 28 exon (ENSMUST00000059272, exon 1 of 2) chr2 74698587 74698833 + E 86 intron (ENSMUST00000059272, intron 1 of 1) chr2 74698834 74699179 + I 145 exon (ENSMUST00000059272, exon 2 of 2) chr2 74699180 74700005 + E 87 TTS (ENSMUST00000198895) chr2 74700006 74700107 - TTS 58 TTS (ENSMUST00000059272) chr2 74700108 74701041 + TTS 37 promoter-TSS (ENSMUST00000198895) chr2 74701042 74702142 - P 29 Intergenic--3 chr2 74702143 74702247 + N 1900000000 TTS (ENSMUST00000132326) chr2 74702248 74703348 - TTS 45 exon (ENSMUST00000132326, exon 2 of 2) chr2 74703349 74703614 - E 108 promoter-TSS (ENSMUST00000151380) chr2 74703615 74703904 + P 24 promoter-TSS (ENSMUST00000019749) chr2 74703905 74705005 + P 3 promoter-TSS (ENSMUST00000074721) chr2 74705006 74705252 + P 10 5' UTR (ENSMUST00000019749, exon 1 of 2) chr2 74705253 74705547 + 5UTR 64 exon (ENSMUST00000019749, exon 1 of 2) chr2 74705548 74706118 + E 65 intron (ENSMUST00000074721, intron 1 of 1) chr2 74706119 74706513 + I 145 exon (ENSMUST00000019749, exon 2 of 2) chr2 74706514 74706711 + E 66 TTS (ENSMUST00000151380) chr2 74706712 74707206 + TTS 53 TTS (ENSMUST00000074721) chr2 74707207 74707832 + TTS 39 TTS (ENSMUST00000019749) chr2 74707833 74708933 + TTS 32 intron (ENSMUST00000132326, intron 1 of 1) chr2 74708934 74709042 - I 145 TTS (ENSMUST00000156342) chr2 74709043 74709192 - TTS 55 TTS (ENSMUST00000145799) chr2 74709193 74710293 - TTS 52 intron (ENSMUST00000145799, intron 2 of 2) chr2 74710294 74710926 - I 145 promoter-TSS (ENSMUST00000111983) chr2 74710927 74712027 + P 14 promoter-TSS (ENSMUST00000132326) chr2 74712028 74713054 - P 16 promoter-TSS (ENSMUST00000156342) chr2 74713055 74713526 - P 26 exon (ENSMUST00000139005, exon 2 of 2) chr2 74713527 74714401 - E 113 intron (ENSMUST00000145799, intron 1 of 2) chr2 74714402 74715705 - I 145 exon (ENSMUST00000139005, exon 1 of 2) chr2 74715706 74715895 - E 114 promoter-TSS (ENSMUST00000145799) chr2 74715896 74716029 - P 23 promoter-TSS (ENSMUST00000139005) chr2 74716030 74717130 - P 18 intron (ENSMUST00000111983, intron 1 of 2) chr2 74717131 74720977 + I 145 promoter-TSS (ENSMUST00000047904) chr2 74720978 74722078 + P 5 5' UTR (ENSMUST00000047904, exon 1 of 6) chr2 74722079 74722177 + 5UTR 71 intron (ENSMUST00000047904, intron 1 of 5) chr2 74722178 74722552 + I 145 5' UTR (ENSMUST00000047904, exon 2 of 6) chr2 74722553 74722631 + 5UTR 72 intron (ENSMUST00000144040, intron 2 of 6) chr2 74722632 74723331 + I 145 5' UTR (ENSMUST00000047904, exon 3 of 6) chr2 74723332 74723367 + 5UTR 73 intron (ENSMUST00000144040, intron 3 of 6) chr2 74723368 74725069 + I 145 promoter-TSS (ENSMUST00000083566) chr2 74725070 74725727 + P 11 promoter-TSS (ENSMUST00000053932) chr2 74725728 74726828 + P 7 promoter-TSS (ENSMUST00000111980) chr2 74726829 74727174 + P 12 5' UTR (ENSMUST00000047904, exon 5 of 6) chr2 74727175 74727278 + 5UTR 75 exon (ENSMUST00000047904, exon 5 of 6) chr2 74727279 74727705 + E 76 intron (ENSMUST00000053932, intron 1 of 3) chr2 74727706 74728261 + I 145 exon (ENSMUST00000047904, exon 6 of 6) chr2 74728262 74728767 + E 77 TTS (ENSMUST00000144040) chr2 74728768 74729022 + TTS 50 TTS (ENSMUST00000111980) chr2 74729023 74729059 + TTS 41 TTS (ENSMUST00000047904) chr2 74729060 74730160 + TTS 34 intron (ENSMUST00000053932, intron 2 of 3) chr2 74730161 74731912 + I 145 promoter-TSS (ENSMUST00000144544) chr2 74731913 74733013 + P 22 5' UTR (ENSMUST00000144544, exon 1 of 2) chr2 74733014 74733040 + 5UTR 128 intron (ENSMUST00000144544, intron 1 of 1) chr2 74733041 74735514 + I 145 promoter-TSS (ENSMUST00000111982) chr2 74735515 74736615 + P 13 5' UTR (ENSMUST00000111982, exon 1 of 3) chr2 74736616 74736705 + 5UTR 98 intron (ENSMUST00000111982, intron 1 of 2) chr2 74736706 74738618 + I 145 promoter-TSS (ENSMUST00000047830) chr2 74738619 74739719 + P 4 intron (ENSMUST00000047830, intron 1 of 2) chr2 74739720 74743927 + I 145 5' UTR (ENSMUST00000047830, exon 2 of 3) chr2 74743928 74744011 + 5UTR 68 exon (ENSMUST00000047830, exon 2 of 3) chr2 74744012 74744113 + E 69 TTS (ENSMUST00000144544) chr2 74744114 74744673 + TTS 51 promoter-TSS (ENSMUST00000140666) chr2 74744674 74745774 + P 19 promoter-TSS (ENSMUST00000190553) chr2 74745775 74745822 + P 27 5' UTR (ENSMUST00000140666, exon 1 of 2) chr2 74745823 74746156 + 5UTR 115 exon (ENSMUST00000140666, exon 1 of 2) chr2 74746157 74746220 + E 116 exon (ENSMUST00000190553, exon 1 of 1) chr2 74746221 74746321 + E 142 exon (ENSMUST00000047830, exon 3 of 3) chr2 74746322 74746495 + E 70 TTS (ENSMUST00000140666) chr2 74746496 74747596 + TTS 48 exon (ENSMUST00000047830, exon 3 of 3)--2 chr2 74747597 74747799 + E 70 TTS (ENSMUST00000047830) chr2 74747800 74748900 + TTS 33 TTS (ENSMUST00000053932) chr2 74748901 74748918 + TTS 36 TTS (ENSMUST00000111983) chr2 74748919 74749271 + TTS 43 TTS (ENSMUST00000190553) chr2 74749272 74749442 + TTS 56 Intergenic--4 chr2 74749443 1500000000 + N 1900000000