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view test-data/annotations_small_TSSTTS.txt @ 2:396cf2c12173 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
author iuc
date Mon, 13 Dec 2021 15:15:14 +0000
parents 8ebb6520eef4
children
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Intergenic	chr2	1	74668259	+	N	1900000000
promoter-TSS (ENSMUST00000001872)	chr2	74668260	74668360	+	P	1
exon (ENSMUST00000001872, exon 1 of 2)	chr2	74668361	74669078	+	E	59
intron (ENSMUST00000001872, intron 1 of 1)	chr2	74669079	74669885	+	I	158
exon (ENSMUST00000001872, exon 2 of 2)	chr2	74669886	74670136	+	E	61
3' UTR (ENSMUST00000001872, exon 2 of 2)	chr2	74670137	74671548	+	3UTR	60
TTS (ENSMUST00000001872)	chr2	74671549	74671649	+	TTS	30
Intergenic--2	chr2	74671650	74674962	+	N	1900000000
promoter-TSS (ENSMUST00000001878)	chr2	74674963	74675063	+	P	2
5' UTR (ENSMUST00000001878, exon 1 of 2)	chr2	74675064	74675086	+	5UTR	62
exon (ENSMUST00000001878, exon 1 of 2)	chr2	74675087	74675654	+	E	63
intron (ENSMUST00000001878, intron 1 of 1)	chr2	74675655	74675813	+	I	158
exon (ENSMUST00000001878, exon 2 of 2)	chr2	74675814	74676052	+	E	65
3' UTR (ENSMUST00000001878, exon 2 of 2)	chr2	74676053	74677654	+	3UTR	64
TTS (ENSMUST00000001878)	chr2	74677655	74677755	+	TTS	31
Intergenic--3	chr2	74677756	74679506	+	N	1900000000
promoter-TSS (ENSMUST00000048086)	chr2	74679507	74679607	+	P	6
exon (ENSMUST00000048086, exon 1 of 2)	chr2	74679608	74679809	+	E	83
intron (ENSMUST00000048086, intron 1 of 1)	chr2	74679810	74682272	+	I	158
promoter-TSS (ENSMUST00000142312)	chr2	74682273	74682373	+	P	20
5' UTR (ENSMUST00000142312, exon 1 of 2)	chr2	74682374	74682392	+	5UTR	130
exon (ENSMUST00000142312, exon 1 of 2)	chr2	74682393	74683167	+	E	131
intron (ENSMUST00000142312, intron 1 of 1)	chr2	74683168	74683395	+	I	158
promoter-TSS (ENSMUST00000136302)	chr2	74683396	74683496	+	P	17
exon (ENSMUST00000136302, exon 1 of 3)	chr2	74683497	74683509	+	E	122
intron (ENSMUST00000136302, intron 1 of 2)	chr2	74683510	74683902	+	I	158
exon (ENSMUST00000048086, exon 2 of 2)	chr2	74683903	74684117	+	E	84
TTS (ENSMUST00000142312)	chr2	74684118	74684218	+	TTS	49
exon (ENSMUST00000048086, exon 2 of 2)--2	chr2	74684219	74686965	+	E	84
TTS (ENSMUST00000048086)	chr2	74686966	74687066	+	TTS	35
intron (ENSMUST00000136302, intron 2 of 2)	chr2	74687067	74691873	+	I	158
promoter-TSS (ENSMUST00000061745)	chr2	74691874	74691974	+	P	9
5' UTR (ENSMUST00000061745, exon 1 of 2)	chr2	74691975	74691979	+	5UTR	95
exon (ENSMUST00000061745, exon 1 of 2)	chr2	74691980	74692724	+	E	96
intron (ENSMUST00000061745, intron 1 of 1)	chr2	74692725	74694090	+	I	158
exon (ENSMUST00000061745, exon 2 of 2)	chr2	74694091	74694143	+	E	98
TTS (ENSMUST00000136302)	chr2	74694144	74694244	+	TTS	46
exon (ENSMUST00000061745, exon 2 of 2)--2	chr2	74694245	74694368	+	E	98
3' UTR (ENSMUST00000061745, exon 2 of 2)	chr2	74694369	74695054	+	3UTR	97
TTS (ENSMUST00000061745)	chr2	74695055	74695155	+	TTS	38
Intergenic--4	chr2	74695156	74695469	+	N	1900000000
promoter-TSS (ENSMUST00000126966)	chr2	74695470	74695570	+	P	15
promoter-TSS (ENSMUST00000152027)	chr2	74695571	74695651	+	P	25
exon (ENSMUST00000126966, exon 1 of 2)	chr2	74695652	74695732	+	E	118
intron (ENSMUST00000126966, intron 1 of 1)	chr2	74695733	74696717	+	I	158
TTS (ENSMUST00000190845)	chr2	74696718	74696818	-	TTS	57
exon (ENSMUST00000190845, exon 2 of 2)	chr2	74696819	74696841	-	E	156
intron (ENSMUST00000190845, intron 1 of 1)	chr2	74696842	74697030	-	I	158
exon (ENSMUST00000126966, exon 2 of 2)	chr2	74697031	74697314	+	E	119
TTS (ENSMUST00000126966)	chr2	74697315	74697415	+	TTS	44
exon (ENSMUST00000190845, exon 1 of 2)	chr2	74697416	74697535	-	E	157
promoter-TSS (ENSMUST00000190845)	chr2	74697536	74697636	-	P	28
Intergenic--5	chr2	74697637	74697676	+	N	1900000000
promoter-TSS (ENSMUST00000059272)	chr2	74697677	74697777	+	P	8
5' UTR (ENSMUST00000059272, exon 1 of 2)	chr2	74697778	74698055	+	5UTR	91
exon (ENSMUST00000059272, exon 1 of 2)	chr2	74698056	74698833	+	E	92
intron (ENSMUST00000059272, intron 1 of 1)	chr2	74698834	74699179	+	I	158
exon (ENSMUST00000059272, exon 2 of 2)	chr2	74699180	74699421	+	E	94
3' UTR (ENSMUST00000059272, exon 2 of 2)	chr2	74699422	74700157	+	3UTR	93
TTS (ENSMUST00000059272)	chr2	74700158	74700258	+	TTS	37
Intergenic--6	chr2	74700259	74700955	+	N	1900000000
TTS (ENSMUST00000198895)	chr2	74700956	74701056	-	TTS	58
exon (ENSMUST00000198895, exon 1 of 1)	chr2	74701057	74701091	-	E	158
promoter-TSS (ENSMUST00000198895)	chr2	74701092	74701192	-	P	29
Intergenic--7	chr2	74701193	74703197	+	N	1900000000
TTS (ENSMUST00000132326)	chr2	74703198	74703298	-	TTS	45
exon (ENSMUST00000132326, exon 2 of 2)	chr2	74703299	74703622	-	E	120
intron (ENSMUST00000132326, intron 1 of 1)	chr2	74703623	74704564	-	I	158
promoter-TSS (ENSMUST00000151380)	chr2	74704565	74704665	+	P	24
5' UTR (ENSMUST00000151380, exon 1 of 3)	chr2	74704666	74704724	+	5UTR	147
intron (ENSMUST00000151380, intron 1 of 2)	chr2	74704725	74704854	+	I	158
promoter-TSS (ENSMUST00000019749)	chr2	74704855	74704955	+	P	3
5' UTR (ENSMUST00000019749, exon 1 of 2)	chr2	74704956	74705101	+	5UTR	66
promoter-TSS (ENSMUST00000074721)	chr2	74705102	74705202	+	P	10
5' UTR (ENSMUST00000074721, exon 1 of 2)	chr2	74705152	74705202	+	5UTR	99
5' UTR (ENSMUST00000019749, exon 1 of 2)--2	chr2	74705203	74705547	+	5UTR	66
exon (ENSMUST00000019749, exon 1 of 2)	chr2	74705548	74706118	+	E	67
intron (ENSMUST00000074721, intron 1 of 1)	chr2	74706119	74706513	+	I	158
exon (ENSMUST00000019749, exon 2 of 2)	chr2	74706514	74706761	+	E	69
TTS (ENSMUST00000151380)	chr2	74706762	74706862	+	TTS	53
3' UTR (ENSMUST00000019749, exon 2 of 2)	chr2	74706863	74707256	+	3UTR	68
TTS (ENSMUST00000074721)	chr2	74707257	74707357	+	TTS	39
3' UTR (ENSMUST00000019749, exon 2 of 2)--2	chr2	74707358	74707882	+	3UTR	68
TTS (ENSMUST00000019749)	chr2	74707883	74707983	+	TTS	32
intron (ENSMUST00000132326, intron 1 of 1)--2	chr2	74707984	74709992	-	I	158
TTS (ENSMUST00000156342)	chr2	74709993	74710093	-	TTS	55
exon (ENSMUST00000156342, exon 2 of 2)	chr2	74710094	74710142	-	E	153
TTS (ENSMUST00000145799)	chr2	74710143	74710243	-	TTS	52
exon (ENSMUST00000145799, exon 3 of 3)	chr2	74710244	74710281	-	E	144
intron (ENSMUST00000145799, intron 2 of 2)	chr2	74710282	74711876	-	I	158
promoter-TSS (ENSMUST00000111983)	chr2	74711877	74711977	+	P	14
promoter-TSS (ENSMUST00000144040)	chr2	74711978	74711979	+	P	21
5' UTR (ENSMUST00000111983, exon 1 of 3)	chr2	74711980	74712003	+	5UTR	113
promoter-TSS (ENSMUST00000132326)	chr2	74712004	74712104	-	P	16
5' UTR (ENSMUST00000111983, exon 1 of 3)--2	chr2	74712105	74712316	+	5UTR	113
exon (ENSMUST00000156342, exon 1 of 2)	chr2	74712317	74712475	-	E	154
promoter-TSS (ENSMUST00000156342)	chr2	74712476	74712576	-	P	26
intron (ENSMUST00000111983, intron 1 of 2)	chr2	74712577	74713075	+	I	158
TTS (ENSMUST00000139005)	chr2	74713076	74713176	-	TTS	47
exon (ENSMUST00000139005, exon 2 of 2)	chr2	74713177	74714401	-	E	125
intron (ENSMUST00000145799, intron 1 of 2)	chr2	74714402	74715705	-	I	158
exon (ENSMUST00000139005, exon 1 of 2)	chr2	74715706	74715945	-	E	126
promoter-TSS (ENSMUST00000145799)	chr2	74715946	74716046	-	P	23
exon (ENSMUST00000139005, exon 1 of 2)--2	chr2	74716047	74716079	-	E	126
promoter-TSS (ENSMUST00000139005)	chr2	74716080	74716180	-	P	18
intron (ENSMUST00000111983, intron 1 of 2)--2	chr2	74716181	74721927	+	I	158
promoter-TSS (ENSMUST00000047904)	chr2	74721928	74722028	+	P	5
5' UTR (ENSMUST00000047904, exon 1 of 6)	chr2	74722029	74722177	+	5UTR	75
intron (ENSMUST00000047904, intron 1 of 5)	chr2	74722178	74722552	+	I	158
5' UTR (ENSMUST00000047904, exon 2 of 6)	chr2	74722553	74722631	+	5UTR	76
intron (ENSMUST00000144040, intron 2 of 6)	chr2	74722632	74723331	+	I	158
5' UTR (ENSMUST00000047904, exon 3 of 6)	chr2	74723332	74723367	+	5UTR	77
intron (ENSMUST00000144040, intron 3 of 6)	chr2	74723368	74725462	+	I	158
5' UTR (ENSMUST00000047904, exon 4 of 6)	chr2	74725463	74725978	+	5UTR	78
intron (ENSMUST00000144040, intron 5 of 6)	chr2	74725979	74726019	+	I	158
promoter-TSS (ENSMUST00000083566)	chr2	74726020	74726120	+	P	11
TTS (ENSMUST00000083566)	chr2	74726121	74726187	+	TTS	40
intron (ENSMUST00000144040, intron 5 of 6)--2	chr2	74726188	74726677	+	I	158
promoter-TSS (ENSMUST00000053932)	chr2	74726678	74726778	+	P	7
5' UTR (ENSMUST00000053932, exon 1 of 4)	chr2	74726779	74726875	+	5UTR	85
5' UTR (ENSMUST00000047904, exon 5 of 6)	chr2	74726876	74727023	+	5UTR	79
promoter-TSS (ENSMUST00000111980)	chr2	74727024	74727124	+	P	12
5' UTR (ENSMUST00000111980, exon 1 of 2)	chr2	74727074	74727124	+	5UTR	104
5' UTR (ENSMUST00000047904, exon 5 of 6)--2	chr2	74727125	74727278	+	5UTR	79
exon (ENSMUST00000047904, exon 5 of 6)	chr2	74727279	74727705	+	E	80
intron (ENSMUST00000053932, intron 1 of 3)	chr2	74727706	74728261	+	I	158
exon (ENSMUST00000047904, exon 6 of 6)	chr2	74728262	74728587	+	E	82
3' UTR (ENSMUST00000047904, exon 6 of 6)	chr2	74728588	74728817	+	3UTR	81
TTS (ENSMUST00000144040)	chr2	74728818	74728918	+	TTS	50
3' UTR (ENSMUST00000047904, exon 6 of 6)--2	chr2	74728919	74729072	+	3UTR	81
TTS (ENSMUST00000111980)	chr2	74729073	74729109	+	TTS	41
TTS (ENSMUST00000047904)	chr2	74729110	74729210	+	TTS	34
intron (ENSMUST00000053932, intron 2 of 3)	chr2	74729211	74732862	+	I	158
promoter-TSS (ENSMUST00000144544)	chr2	74732863	74732963	+	P	22
5' UTR (ENSMUST00000144544, exon 1 of 2)	chr2	74732964	74733040	+	5UTR	141
intron (ENSMUST00000144544, intron 1 of 1)	chr2	74733041	74736464	+	I	158
promoter-TSS (ENSMUST00000111982)	chr2	74736465	74736565	+	P	13
5' UTR (ENSMUST00000111982, exon 1 of 3)	chr2	74736566	74736705	+	5UTR	108
intron (ENSMUST00000111982, intron 1 of 2)	chr2	74736706	74739568	+	I	158
promoter-TSS (ENSMUST00000047830)	chr2	74739569	74739669	+	P	4
5' UTR (ENSMUST00000047830, exon 1 of 3)	chr2	74739670	74739703	+	5UTR	70
intron (ENSMUST00000047830, intron 1 of 2)	chr2	74739704	74743927	+	I	158
5' UTR (ENSMUST00000047830, exon 2 of 3)	chr2	74743928	74744011	+	5UTR	71
exon (ENSMUST00000047830, exon 2 of 3)	chr2	74744012	74744163	+	E	72
TTS (ENSMUST00000144544)	chr2	74744164	74744264	+	TTS	51
exon (ENSMUST00000047830, exon 2 of 3)--2	chr2	74744265	74744555	+	E	72
intron (ENSMUST00000111983, intron 2 of 2)	chr2	74744556	74745623	+	I	158
promoter-TSS (ENSMUST00000140666)	chr2	74745624	74745724	+	P	19
promoter-TSS (ENSMUST00000190553)	chr2	74745725	74745772	+	P	27
5' UTR (ENSMUST00000140666, exon 1 of 2)	chr2	74745773	74746156	+	5UTR	127
exon (ENSMUST00000140666, exon 1 of 2)	chr2	74746157	74746220	+	E	128
exon (ENSMUST00000190553, exon 1 of 1)	chr2	74746221	74746321	+	E	155
exon (ENSMUST00000047830, exon 3 of 3)	chr2	74746322	74746545	+	E	74
TTS (ENSMUST00000140666)	chr2	74746546	74746646	+	TTS	48
exon (ENSMUST00000047830, exon 3 of 3)--2	chr2	74746647	74747079	+	E	74
3' UTR (ENSMUST00000047830, exon 3 of 3)	chr2	74747080	74747849	+	3UTR	73
3' UTR (ENSMUST00000111983, exon 3 of 3)	chr2	74747080	74747849	+	3UTR	116
TTS (ENSMUST00000047830)	chr2	74747850	74747950	+	TTS	33
TTS (ENSMUST00000053932)	chr2	74747951	74747968	+	TTS	36
3' UTR (ENSMUST00000111983, exon 3 of 3)--2	chr2	74747969	74748220	+	3UTR	116
TTS (ENSMUST00000111983)	chr2	74748221	74748321	+	TTS	43
exon (ENSMUST00000190553, exon 1 of 1)--2	chr2	74748322	74748391	+	E	155
TTS (ENSMUST00000190553)	chr2	74748392	74748492	+	TTS	56
Intergenic--8	chr2	74748493	1500000000	+	N	1900000000