Mercurial > repos > iuc > homer_scanmotifgenomewide

annotate test-data/motif_test1/homerResults/motif8.info.html @ 2:f15794662a69 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e6639e130c5bf50f489dd09e38a1cbc712280fff
author iuc
date Fri, 07 Apr 2023 15:00:57 +0000
parents db456c398880
children
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1 <HTML><HEAD><TITLE>Motif 8</TITLE></HEAD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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2 <H2>Information for 5-GATGATGC (Motif 8)</H2>
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3 <svg width="205" height="50">
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4 <g font-family="Arial" font-weight="bold" font-size="66.5">
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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73 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,101,39)">T</text>
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74 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,100,34)">C</text>
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75
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76 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,125,49)">C</text>
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77 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,125,44)">G</text>
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78 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,126,39)">T</text>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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79 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,127,34)">A</text>
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81 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,152,49)">A</text>
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82 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,150,44)">C</text>
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83 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,150,39)">G</text>
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84 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,151,34)">T</text>
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86 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,177,49)">A</text>
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87 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,175,44)">G</text>
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88 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,176,39)">T</text>
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89 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,175,34)">C</text>
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90
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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91 </g>
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92 </svg>
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93 <BR>
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94 <TABLE border="1" cellpading="0" cellspacing="0">
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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95 <TR><TD>p-value:</TD><TD>1e-1</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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96 <TR><TD>log p-value:</TD><TD>-2.889e+00</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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97 <TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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98 <TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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99 <TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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100 <TR><TD>Number of Background Sequences with motif</TD><TD>223.5</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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101 <TR><TD>Percentage of Background Sequences with motif</TD><TD>5.58%</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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102 <TR><TD>Average Position of motif in Targets</TD><TD>117.0 +/- 0.0bp</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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103 <TR><TD>Average Position of motif in Background</TD><TD>93.3 +/- 78.0bp</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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104 <TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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105 <TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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106 <TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif8.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif8RV.motif">reverse opposite</A></TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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107 <TR><TD>SVG Files for Logos:</TD><TD><A HREF="motif8.logo.svg">forward logo</A><BR/><A HREF="motif8RV.logo.svg">reverse opposite</A></TD></TR>
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108 </TABLE>
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109 <H3>Matches to Known Motifs</H3>
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110 <TABLE border="1" cellpading="0" cellspacing="0">
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111 <TR><TD>
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112 <H4>AGL42/MA1201.1/Jaspar</H4>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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113 <TABLE><TR><TD>
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114 <TABLE>
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115 <TR><TD>Match Rank:</TD><TD>1</TD></TR>
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116 <TR><TD>Score:</TD><TD>0.90</TD</TR>
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117 <TR><TD>Offset:</TD><TD>0</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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118 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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119 <TR><TD>Alignment:</TD><TD><FONT face="courier">GATGATGC</FONT><BR><FONT face="courier">GATGATG-</FONT></TD></TR></TABLE>
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120 </TD><TD>
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121 <svg width="205" height="50">
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122 <g font-family="Arial" font-weight="bold" font-size="66.5">
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123 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,2,49)">A</text>
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124 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,0,44)">C</text>
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125 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,1,39)">T</text>
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126 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,0,34)">G</text>
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129 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,25,44)">G</text>
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130 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,26,39)">T</text>
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131 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,27,34)">A</text>
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133 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,52,49)">A</text>
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134 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,50,44)">C</text>
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135 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,50,39)">G</text>
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136 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,51,34)">T</text>
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138 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,77,49)">A</text>
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139 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,75,44)">C</text>
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140 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,76,39)">T</text>
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141 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,75,34)">G</text>
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143 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,100,49)">C</text>
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144 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,100,44)">G</text>
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145 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,101,39)">T</text>
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146 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,102,34)">A</text>
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209 </g>
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210 </svg>
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211
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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212 </TD></TR></TABLE>
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213 </TD></TR>
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214 <TR><TD>
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215 <H4>RBM47(RRM)/Gallus_gallus-RNCMPT00279-PBM/HughesRNA</H4>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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216 <TABLE><TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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217 <TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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218 <TR><TD>Match Rank:</TD><TD>2</TD></TR>
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219 <TR><TD>Score:</TD><TD>0.83</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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220 <TR><TD>Offset:</TD><TD>0</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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221 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
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222 <TR><TD>Alignment:</TD><TD><FONT face="courier">GATGATGC</FONT><BR><FONT face="courier">GATGATN-</FONT></TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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223 </TD><TD>
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313 </svg>
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315 </TD></TR></TABLE>
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316 </TD></TR>
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317 <TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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318 <H4>RIN(RRM)/Drosophila_melanogaster-RNCMPT00138-PBM/HughesRNA</H4>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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319 <TABLE><TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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320 <TABLE>
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321 <TR><TD>Match Rank:</TD><TD>3</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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322 <TR><TD>Score:</TD><TD>0.83</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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323 <TR><TD>Offset:</TD><TD>-1</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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324 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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325 <TR><TD>Alignment:</TD><TD><FONT face="courier">-GATGATGC</FONT><BR><FONT face="courier">AGATGATG-</FONT></TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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326 </TD><TD>
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327 <svg width="230" height="50">
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428 </TD></TR></TABLE>
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429 </TD></TR>
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430 <TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
parents:
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431 <H4>ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer</H4>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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432 <TABLE><TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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433 <TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
parents:
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434 <TR><TD>Match Rank:</TD><TD>4</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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435 <TR><TD>Score:</TD><TD>0.79</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
parents:
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436 <TR><TD>Offset:</TD><TD>-3</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
parents:
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437 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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438 <TR><TD>Alignment:</TD><TD><FONT face="courier">---GATGATGC</FONT><BR><FONT face="courier">GATGATGATG-</FONT></TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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439 </TD><TD>
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559 </svg>
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561 </TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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562 </TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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563 <TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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564 <H4>Rbm47(RRM)/Xenopus_tropicalis-RNCMPT00280-PBM/HughesRNA</H4>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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565 <TABLE><TR><TD>
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566 <TABLE>
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iuc
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diff changeset
567 <TR><TD>Match Rank:</TD><TD>5</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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568 <TR><TD>Score:</TD><TD>0.78</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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569 <TR><TD>Offset:</TD><TD>0</TD</TR>
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570 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
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571 <TR><TD>Alignment:</TD><TD><FONT face="courier">GATGATGC</FONT><BR><FONT face="courier">GATGATN-</FONT></TD></TR></TABLE>
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572 </TD><TD>
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573 <svg width="205" height="50">
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665 </TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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666 <TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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667 <H4>RBP1-LIKE(RRM)/Drosophila_melanogaster-RNCMPT00127-PBM/HughesRNA</H4>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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668 <TABLE><TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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669 <TABLE>
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iuc
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670 <TR><TD>Match Rank:</TD><TD>6</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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671 <TR><TD>Score:</TD><TD>0.77</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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672 <TR><TD>Offset:</TD><TD>-1</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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673 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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674 <TR><TD>Alignment:</TD><TD><FONT face="courier">-GATGATGC</FONT><BR><FONT face="courier">CGTTGAT--</FONT></TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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675 </TD><TD>
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676 <svg width="230" height="50">
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777 </TD></TR></TABLE>
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778 </TD></TR>
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779 <TR><TD>
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780 <H4>ATF4/MA0833.1/Jaspar</H4>
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781 <TABLE><TR><TD>
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782 <TABLE>
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783 <TR><TD>Match Rank:</TD><TD>7</TD></TR>
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784 <TR><TD>Score:</TD><TD>0.75</TD</TR>
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785 <TR><TD>Offset:</TD><TD>-1</TD</TR>
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786 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
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787 <TR><TD>Alignment:</TD><TD><FONT face="courier">-GATGATGC----</FONT><BR><FONT face="courier">GGATGATGCAATA</FONT></TD></TR></TABLE>
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930 </TD></TR></TABLE>
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931 </TD></TR>
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933 <H4>Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer</H4>
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934 <TABLE><TR><TD>
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935 <TABLE>
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936 <TR><TD>Match Rank:</TD><TD>8</TD></TR>
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937 <TR><TD>Score:</TD><TD>0.74</TD</TR>
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938 <TR><TD>Offset:</TD><TD>1</TD</TR>
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939 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
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940 <TR><TD>Alignment:</TD><TD><FONT face="courier">GATGATGC---</FONT><BR><FONT face="courier">-MTGATGCAAT</FONT></TD></TR></TABLE>
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1063 </TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1064 </TD></TR>
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1065 <TR><TD>
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iuc
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diff changeset
1066 <H4>Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer</H4>
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1067 <TABLE><TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1068 <TABLE>
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iuc
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diff changeset
1069 <TR><TD>Match Rank:</TD><TD>9</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1070 <TR><TD>Score:</TD><TD>0.73</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1071 <TR><TD>Offset:</TD><TD>1</TD</TR>
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1072 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1073 <TR><TD>Alignment:</TD><TD><FONT face="courier">GATGATGC---</FONT><BR><FONT face="courier">-ATGATGCAAT</FONT></TD></TR></TABLE>
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1074 </TD><TD>
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1196 </TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1197 </TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1198 <TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
parents:
diff changeset
1199 <H4>AARE(HLH)/mES-cMyc-ChIP-Seq/Homer</H4>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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1200 <TABLE><TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1201 <TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1202 <TR><TD>Match Rank:</TD><TD>10</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1203 <TR><TD>Score:</TD><TD>0.70</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1204 <TR><TD>Offset:</TD><TD>2</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1205 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1206 <TR><TD>Alignment:</TD><TD><FONT face="courier">GATGATGC----</FONT><BR><FONT face="courier">--TGATGCAATC</FONT></TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1207 </TD><TD>
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iuc
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1208 <svg width="305" height="50">
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1209 <g font-family="Arial" font-weight="bold" font-size="66.5">
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1340 </TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1343 </BODY></HTML>