Mercurial > repos > iuc > homer_scanmotifgenomewide
comparison tool_data_table_conf.xml.test @ 1:465be78e9b05 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
author | iuc |
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date | Thu, 06 Apr 2023 16:21:39 +0000 |
parents | db456c398880 |
children |
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0:db456c398880 | 1:465be78e9b05 |
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1 <tables> | 1 <tables> |
2 <!-- Locations of preparsed genomes --> | 2 <!-- Locations of preparsed genomes --> |
3 <table name="homer_preparse" comment_char="#"> | 3 <table name="homer_preparse" comment_char="#"> |
4 <columns>value, dbkey, mask, size, name, path, path_fasta, version</columns> | 4 <columns>value, dbkey, mask, size, name, path, path_fasta, version</columns> |
5 <file path="${__HERE__}/test-data/homer_preparse.loc" /> | 5 <file path="${__HERE__}/test-data/homer_preparse.loc"/> |
6 </table> | 6 </table> |
7 <!-- Locations of all fasta files under genome directory --> | 7 <!-- Locations of all fasta files under genome directory --> |
8 <table name="all_fasta" comment_char="#"> | 8 <table name="all_fasta" comment_char="#"> |
9 <columns>value, dbkey, name, path</columns> | 9 <columns>value, dbkey, name, path</columns> |
10 <file path="${__HERE__}/test-data/all_fasta.loc" /> | 10 <file path="${__HERE__}/test-data/all_fasta.loc"/> |
11 </table> | |
12 <!-- Built-in homer promoter and ID DBs (dir of <env>/share/data, 1 per organism) --> | |
13 <table name="homer_promoters" comment_char="#"> | |
14 <columns>value, dbkey, organism, path, organism_version, promoter_version</columns> | |
15 <file path="${__HERE__}/test-data/homer_promoters.loc"/> | |
11 </table> | 16 </table> |
12 </tables> | 17 </tables> |