Mercurial > repos > iuc > homer_scanmotifgenomewide
comparison test-data/motif_test1/homerResults/motif1.info.html @ 0:db456c398880 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
author | iuc |
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date | Mon, 13 Dec 2021 15:13:33 +0000 |
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1 <HTML><HEAD><TITLE>Motif 1</TITLE></HEAD> | |
2 <H2>Information for 1-ATGAGCTTAATC (Motif 1)</H2> | |
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67 | |
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133 <BR> | |
134 <TABLE border="1" cellpading="0" cellspacing="0"> | |
135 <TR><TD>p-value:</TD><TD>1e-1</TD></TR> | |
136 <TR><TD>log p-value:</TD><TD>-2.921e+00</TD></TR> | |
137 <TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR> | |
138 <TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR> | |
139 <TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR> | |
140 <TR><TD>Number of Background Sequences with motif</TD><TD>216.0</TD></TR> | |
141 <TR><TD>Percentage of Background Sequences with motif</TD><TD>5.39%</TD></TR> | |
142 <TR><TD>Average Position of motif in Targets</TD><TD>105.0 +/- 0.0bp</TD></TR> | |
143 <TR><TD>Average Position of motif in Background</TD><TD>97.7 +/- 71.4bp</TD></TR> | |
144 <TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR> | |
145 <TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR> | |
146 <TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif1.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif1RV.motif">reverse opposite</A></TD></TR> | |
147 <TR><TD>SVG Files for Logos:</TD><TD><A HREF="motif1.logo.svg">forward logo</A><BR/><A HREF="motif1RV.logo.svg">reverse opposite</A></TD></TR> | |
148 </TABLE> | |
149 <H3>Matches to Known Motifs</H3> | |
150 <TABLE border="1" cellpading="0" cellspacing="0"> | |
151 <TR><TD> | |
152 <H4>Oc/dmmpmm(Noyes_hd)/fly</H4> | |
153 <TABLE><TR><TD> | |
154 <TABLE> | |
155 <TR><TD>Match Rank:</TD><TD>1</TD></TR> | |
156 <TR><TD>Score:</TD><TD>0.65</TD</TR> | |
157 <TR><TD>Offset:</TD><TD>4</TD</TR> | |
158 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR> | |
159 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATGAGCTTAATC--</FONT><BR><FONT face="courier">----NNTTAATCCN</FONT></TD></TR></TABLE> | |
160 </TD><TD> | |
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312 </TD></TR></TABLE> | |
313 </TD></TR> | |
314 <TR><TD> | |
315 <H4>PHO2(MacIsaac)/Yeast</H4> | |
316 <TABLE><TR><TD> | |
317 <TABLE> | |
318 <TR><TD>Match Rank:</TD><TD>2</TD></TR> | |
319 <TR><TD>Score:</TD><TD>0.65</TD</TR> | |
320 <TR><TD>Offset:</TD><TD>5</TD</TR> | |
321 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR> | |
322 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATGAGCTTAATC</FONT><BR><FONT face="courier">-----CTTAAT-</FONT></TD></TR></TABLE> | |
323 </TD><TD> | |
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455 </TD></TR></TABLE> | |
456 </TD></TR> | |
457 <TR><TD> | |
458 <H4>oc/dmmpmm(Noyes)/fly</H4> | |
459 <TABLE><TR><TD> | |
460 <TABLE> | |
461 <TR><TD>Match Rank:</TD><TD>3</TD></TR> | |
462 <TR><TD>Score:</TD><TD>0.65</TD</TR> | |
463 <TR><TD>Offset:</TD><TD>6</TD</TR> | |
464 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR> | |
465 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATGAGCTTAATC-</FONT><BR><FONT face="courier">------TTAATCC</FONT></TD></TR></TABLE> | |
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608 </TD></TR></TABLE> | |
609 </TD></TR> | |
610 <TR><TD> | |
611 <H4>Gsc/dmmpmm(Noyes_hd)/fly</H4> | |
612 <TABLE><TR><TD> | |
613 <TABLE> | |
614 <TR><TD>Match Rank:</TD><TD>4</TD></TR> | |
615 <TR><TD>Score:</TD><TD>0.64</TD</TR> | |
616 <TR><TD>Offset:</TD><TD>4</TD</TR> | |
617 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR> | |
618 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATGAGCTTAATC--</FONT><BR><FONT face="courier">----NNTTAATCCN</FONT></TD></TR></TABLE> | |
619 </TD><TD> | |
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770 | |
771 </TD></TR></TABLE> | |
772 </TD></TR> | |
773 <TR><TD> | |
774 <H4>bcd/dmmpmm(Noyes_hd)/fly</H4> | |
775 <TABLE><TR><TD> | |
776 <TABLE> | |
777 <TR><TD>Match Rank:</TD><TD>5</TD></TR> | |
778 <TR><TD>Score:</TD><TD>0.64</TD</TR> | |
779 <TR><TD>Offset:</TD><TD>4</TD</TR> | |
780 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR> | |
781 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATGAGCTTAATC--</FONT><BR><FONT face="courier">----GGTTAATCCN</FONT></TD></TR></TABLE> | |
782 </TD><TD> | |
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934 </TD></TR></TABLE> | |
935 </TD></TR> | |
936 <TR><TD> | |
937 <H4>OTX2/MA0712.1/Jaspar</H4> | |
938 <TABLE><TR><TD> | |
939 <TABLE> | |
940 <TR><TD>Match Rank:</TD><TD>6</TD></TR> | |
941 <TR><TD>Score:</TD><TD>0.64</TD</TR> | |
942 <TR><TD>Offset:</TD><TD>6</TD</TR> | |
943 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR> | |
944 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATGAGCTTAATC--</FONT><BR><FONT face="courier">------TTAATCCT</FONT></TD></TR></TABLE> | |
945 </TD><TD> | |
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1097 </TD></TR></TABLE> | |
1098 </TD></TR> | |
1099 <TR><TD> | |
1100 <H4>OTX1/MA0711.1/Jaspar</H4> | |
1101 <TABLE><TR><TD> | |
1102 <TABLE> | |
1103 <TR><TD>Match Rank:</TD><TD>7</TD></TR> | |
1104 <TR><TD>Score:</TD><TD>0.63</TD</TR> | |
1105 <TR><TD>Offset:</TD><TD>6</TD</TR> | |
1106 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR> | |
1107 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATGAGCTTAATC--</FONT><BR><FONT face="courier">------TTAATCCG</FONT></TD></TR></TABLE> | |
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1260 </TD></TR></TABLE> | |
1261 </TD></TR> | |
1262 <TR><TD> | |
1263 <H4>ESRRB/MA0141.3/Jaspar</H4> | |
1264 <TABLE><TR><TD> | |
1265 <TABLE> | |
1266 <TR><TD>Match Rank:</TD><TD>8</TD></TR> | |
1267 <TR><TD>Score:</TD><TD>0.63</TD</TR> | |
1268 <TR><TD>Offset:</TD><TD>-1</TD</TR> | |
1269 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR> | |
1270 <TR><TD>Alignment:</TD><TD><FONT face="courier">-ATGAGCTTAATC</FONT><BR><FONT face="courier">NATGACCTTGA--</FONT></TD></TR></TABLE> | |
1271 </TD><TD> | |
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1413 </TD></TR></TABLE> | |
1414 </TD></TR> | |
1415 <TR><TD> | |
1416 <H4>GSC2/MA0891.1/Jaspar</H4> | |
1417 <TABLE><TR><TD> | |
1418 <TABLE> | |
1419 <TR><TD>Match Rank:</TD><TD>9</TD></TR> | |
1420 <TR><TD>Score:</TD><TD>0.63</TD</TR> | |
1421 <TR><TD>Offset:</TD><TD>5</TD</TR> | |
1422 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR> | |
1423 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATGAGCTTAATC---</FONT><BR><FONT face="courier">-----CCTAATCCGC</FONT></TD></TR></TABLE> | |
1424 </TD><TD> | |
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1586 </TD></TR></TABLE> | |
1587 </TD></TR> | |
1588 <TR><TD> | |
1589 <H4>Pitx1/MA0682.1/Jaspar</H4> | |
1590 <TABLE><TR><TD> | |
1591 <TABLE> | |
1592 <TR><TD>Match Rank:</TD><TD>10</TD></TR> | |
1593 <TR><TD>Score:</TD><TD>0.63</TD</TR> | |
1594 <TR><TD>Offset:</TD><TD>6</TD</TR> | |
1595 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR> | |
1596 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATGAGCTTAATC--</FONT><BR><FONT face="courier">------TTAATCCC</FONT></TD></TR></TABLE> | |
1597 </TD><TD> | |
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