Mercurial > repos > iuc > homer_scanmotifgenomewide

comparison test-data/motif_test1/homerResults/motif1.similar.html @ 0:db456c398880 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
author iuc
date Mon, 13 Dec 2021 15:13:33 +0000
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1 <HTML><HEAD><TITLE>motif1</TITLE></HEAD>
2 <H2>Information for motif1</H2>
3 <svg width="305" height="50">
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132 <BR/>
133 <TABLE border="1" cellpading="0" cellspacing="0">
134 <TR><TD>p-value:</TD><TD>1e-1</TD></TR>
135 <TR><TD>log p-value:</TD><TD>-2.921e+00</TD></TR>
136 <TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR>
137 <TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR>
138 <TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR>
139 <TR><TD>Number of Background Sequences with motif</TD><TD>216.0</TD></TR>
140 <TR><TD>Percentage of Background Sequences with motif</TD><TD>5.39%</TD></TR>
141 <TR><TD>Average Position of motif in Targets</TD><TD>105.0 +/- 0.0bp</TD></TR>
142 <TR><TD>Average Position of motif in Background</TD><TD>97.7 +/- 71.4bp</TD></TR>
143 <TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR>
144 <TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR>
145 <TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif1.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif1RV.motif">reverse opposite</A></TD></TR>
146 </TABLE>
147 <H3>Similar de novo motifs found</H3>
148 <TABLE border="1" cellpading="0" cellspacing="0">
149 <TR><TD>Rank</TD><TD>Match Score</TD><TD>Redundant Motif</TD><TD>P-value</TD><TD>log P-value</TD><TD>% of Targets</TD><TD>% of Background</TD><TD>Motif file</TD></TR>
150 <TR><TD>1</TD><TD>0.639</TD><TD><svg width="255" height="50">
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204
205 </TD><TD>1e-1</TD><TD>-2.906976</TD><TD>100.00%</TD><TD>5.48%</TD><TD><A target="_blank" HREF="motif1.similar1.motif">motif file (matrix)</A></TD></TR>
206 <TR><TD>2</TD><TD>0.667</TD><TD><svg width="305" height="50">
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271 </TD><TD>1e-1</TD><TD>-2.906976</TD><TD>100.00%</TD><TD>5.48%</TD><TD><A target="_blank" HREF="motif1.similar2.motif">motif file (matrix)</A></TD></TR>
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317 </TD><TD>1e-1</TD><TD>-2.888876</TD><TD>100.00%</TD><TD>5.58%</TD><TD><A target="_blank" HREF="motif1.similar3.motif">motif file (matrix)</A></TD></TR>
318 </TABLE>
319 <P></P>
320 </BODY></HTML>