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comparison test-data/motif_test1/homerResults/motif5.info.html @ 0:db456c398880 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
author iuc
date Mon, 13 Dec 2021 15:13:33 +0000
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1 <HTML><HEAD><TITLE>Motif 5</TITLE></HEAD>
2 <H2>Information for 2-ATCAAGATGA (Motif 5)</H2>
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57
58 <BR>
59 Reverse Opposite:<BR/><svg width="255" height="50">
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113 <BR>
114 <TABLE border="1" cellpading="0" cellspacing="0">
115 <TR><TD>p-value:</TD><TD>1e-1</TD></TR>
116 <TR><TD>log p-value:</TD><TD>-2.907e+00</TD></TR>
117 <TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR>
118 <TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR>
119 <TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR>
120 <TR><TD>Number of Background Sequences with motif</TD><TD>219.8</TD></TR>
121 <TR><TD>Percentage of Background Sequences with motif</TD><TD>5.48%</TD></TR>
122 <TR><TD>Average Position of motif in Targets</TD><TD>113.0 +/- 0.0bp</TD></TR>
123 <TR><TD>Average Position of motif in Background</TD><TD>94.6 +/- 75.6bp</TD></TR>
124 <TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR>
125 <TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR>
126 <TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif5.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif5RV.motif">reverse opposite</A></TD></TR>
127 <TR><TD>SVG Files for Logos:</TD><TD><A HREF="motif5.logo.svg">forward logo</A><BR/><A HREF="motif5RV.logo.svg">reverse opposite</A></TD></TR>
128 </TABLE>
129 <H3>Matches to Known Motifs</H3>
130 <TABLE border="1" cellpading="0" cellspacing="0">
131 <TR><TD>
132 <H4>SNRNP70K(RRM)/Drosophila_melanogaster-RNCMPT00143-PBM/HughesRNA</H4>
133 <TABLE><TR><TD>
134 <TABLE>
135 <TR><TD>Match Rank:</TD><TD>1</TD></TR>
136 <TR><TD>Score:</TD><TD>0.79</TD</TR>
137 <TR><TD>Offset:</TD><TD>-1</TD</TR>
138 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
139 <TR><TD>Alignment:</TD><TD><FONT face="courier">-ATCAAGATGA</FONT><BR><FONT face="courier">GATCAAGA---</FONT></TD></TR></TABLE>
140 </TD><TD>
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263 </TD></TR>
264 <TR><TD>
265 <H4>MATR3(RRM)/Homo_sapiens-RNCMPT00037-PBM/HughesRNA</H4>
266 <TABLE><TR><TD>
267 <TABLE>
268 <TR><TD>Match Rank:</TD><TD>2</TD></TR>
269 <TR><TD>Score:</TD><TD>0.77</TD</TR>
270 <TR><TD>Offset:</TD><TD>2</TD</TR>
271 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
272 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATCAAGATGA</FONT><BR><FONT face="courier">--CAAGATT-</FONT></TD></TR></TABLE>
273 </TD><TD>
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386 </TD></TR>
387 <TR><TD>
388 <H4>SNRNP70(RRM)/Homo_sapiens-RNCMPT00070-PBM/HughesRNA</H4>
389 <TABLE><TR><TD>
390 <TABLE>
391 <TR><TD>Match Rank:</TD><TD>3</TD></TR>
392 <TR><TD>Score:</TD><TD>0.74</TD</TR>
393 <TR><TD>Offset:</TD><TD>-1</TD</TR>
394 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
395 <TR><TD>Alignment:</TD><TD><FONT face="courier">-ATCAAGATGA</FONT><BR><FONT face="courier">GATCAAG----</FONT></TD></TR></TABLE>
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519 </TD></TR>
520 <TR><TD>
521 <H4>At5g05790/MA1196.1/Jaspar</H4>
522 <TABLE><TR><TD>
523 <TABLE>
524 <TR><TD>Match Rank:</TD><TD>4</TD></TR>
525 <TR><TD>Score:</TD><TD>0.68</TD</TR>
526 <TR><TD>Offset:</TD><TD>-1</TD</TR>
527 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
528 <TR><TD>Alignment:</TD><TD><FONT face="courier">-ATCAAGATGA----</FONT><BR><FONT face="courier">GATNAAGATAAGGTT</FONT></TD></TR></TABLE>
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692 </TD></TR>
693 <TR><TD>
694 <H4>RBM47(RRM)/Gallus_gallus-RNCMPT00279-PBM/HughesRNA</H4>
695 <TABLE><TR><TD>
696 <TABLE>
697 <TR><TD>Match Rank:</TD><TD>5</TD></TR>
698 <TR><TD>Score:</TD><TD>0.68</TD</TR>
699 <TR><TD>Offset:</TD><TD>5</TD</TR>
700 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
701 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATCAAGATGA--</FONT><BR><FONT face="courier">-----GATGATN</FONT></TD></TR></TABLE>
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835 </TD></TR>
836 <TR><TD>
837 <H4>Rbm47(RRM)/Xenopus_tropicalis-RNCMPT00280-PBM/HughesRNA</H4>
838 <TABLE><TR><TD>
839 <TABLE>
840 <TR><TD>Match Rank:</TD><TD>6</TD></TR>
841 <TR><TD>Score:</TD><TD>0.67</TD</TR>
842 <TR><TD>Offset:</TD><TD>5</TD</TR>
843 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
844 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATCAAGATGA--</FONT><BR><FONT face="courier">-----GATGATN</FONT></TD></TR></TABLE>
845 </TD><TD>
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978 </TD></TR>
979 <TR><TD>
980 <H4>RIN(RRM)/Drosophila_melanogaster-RNCMPT00138-PBM/HughesRNA</H4>
981 <TABLE><TR><TD>
982 <TABLE>
983 <TR><TD>Match Rank:</TD><TD>7</TD></TR>
984 <TR><TD>Score:</TD><TD>0.65</TD</TR>
985 <TR><TD>Offset:</TD><TD>4</TD</TR>
986 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
987 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATCAAGATGA--</FONT><BR><FONT face="courier">----AGATGATG</FONT></TD></TR></TABLE>
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1122 <TR><TD>
1123 <H4>ZBTB18/MA0698.1/Jaspar</H4>
1124 <TABLE><TR><TD>
1125 <TABLE>
1126 <TR><TD>Match Rank:</TD><TD>8</TD></TR>
1127 <TR><TD>Score:</TD><TD>0.64</TD</TR>
1128 <TR><TD>Offset:</TD><TD>-1</TD</TR>
1129 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
1130 <TR><TD>Alignment:</TD><TD><FONT face="courier">-ATCAAGATGA--</FONT><BR><FONT face="courier">CATCCAGATGTTC</FONT></TD></TR></TABLE>
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1273 </TD></TR></TABLE>
1274 </TD></TR>
1275 <TR><TD>
1276 <H4>At3g11280/MA1188.1/Jaspar</H4>
1277 <TABLE><TR><TD>
1278 <TABLE>
1279 <TR><TD>Match Rank:</TD><TD>9</TD></TR>
1280 <TR><TD>Score:</TD><TD>0.64</TD</TR>
1281 <TR><TD>Offset:</TD><TD>0</TD</TR>
1282 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
1283 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATCAAGATGA----</FONT><BR><FONT face="courier">ATNAAGATAAGGAT</FONT></TD></TR></TABLE>
1284 </TD><TD>
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1437 </TD></TR>
1438 <TR><TD>
1439 <H4>onecut/dmmpmm(Noyes_hd)/fly</H4>
1440 <TABLE><TR><TD>
1441 <TABLE>
1442 <TR><TD>Match Rank:</TD><TD>10</TD></TR>
1443 <TR><TD>Score:</TD><TD>0.63</TD</TR>
1444 <TR><TD>Offset:</TD><TD>-3</TD</TR>
1445 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
1446 <TR><TD>Alignment:</TD><TD><FONT face="courier">---ATCAAGATGA</FONT><BR><FONT face="courier">CAAATCAANN---</FONT></TD></TR></TABLE>
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