Mercurial > repos > iuc > homer_scanmotifgenomewide
comparison test-data/motif_test1/homerResults/motif7.info.html @ 0:db456c398880 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
author | iuc |
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date | Mon, 13 Dec 2021 15:13:33 +0000 |
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1 <HTML><HEAD><TITLE>Motif 7</TITLE></HEAD> | |
2 <H2>Information for 1-CCCTAATG (Motif 7)</H2> | |
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44 | |
45 </g> | |
46 </svg> | |
47 | |
48 <BR> | |
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85 | |
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90 | |
91 </g> | |
92 </svg> | |
93 <BR> | |
94 <TABLE border="1" cellpading="0" cellspacing="0"> | |
95 <TR><TD>p-value:</TD><TD>1e-1</TD></TR> | |
96 <TR><TD>log p-value:</TD><TD>-2.898e+00</TD></TR> | |
97 <TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR> | |
98 <TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR> | |
99 <TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR> | |
100 <TR><TD>Number of Background Sequences with motif</TD><TD>221.6</TD></TR> | |
101 <TR><TD>Percentage of Background Sequences with motif</TD><TD>5.53%</TD></TR> | |
102 <TR><TD>Average Position of motif in Targets</TD><TD>98.0 +/- 0.0bp</TD></TR> | |
103 <TR><TD>Average Position of motif in Background</TD><TD>97.0 +/- 70.2bp</TD></TR> | |
104 <TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR> | |
105 <TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR> | |
106 <TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif7.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif7RV.motif">reverse opposite</A></TD></TR> | |
107 <TR><TD>SVG Files for Logos:</TD><TD><A HREF="motif7.logo.svg">forward logo</A><BR/><A HREF="motif7RV.logo.svg">reverse opposite</A></TD></TR> | |
108 </TABLE> | |
109 <H3>Matches to Known Motifs</H3> | |
110 <TABLE border="1" cellpading="0" cellspacing="0"> | |
111 <TR><TD> | |
112 <H4>HNRNPA1L2(RRM)/Homo_sapiens-RNCMPT00023-PBM/HughesRNA</H4> | |
113 <TABLE><TR><TD> | |
114 <TABLE> | |
115 <TR><TD>Match Rank:</TD><TD>1</TD></TR> | |
116 <TR><TD>Score:</TD><TD>0.81</TD</TR> | |
117 <TR><TD>Offset:</TD><TD>-1</TD</TR> | |
118 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR> | |
119 <TR><TD>Alignment:</TD><TD><FONT face="courier">-CCCTAATG</FONT><BR><FONT face="courier">TCCCTAA--</FONT></TD></TR></TABLE> | |
120 </TD><TD> | |
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221 | |
222 </TD></TR></TABLE> | |
223 </TD></TR> | |
224 <TR><TD> | |
225 <H4>zen/dmmpmm(Noyes_hd)/fly</H4> | |
226 <TABLE><TR><TD> | |
227 <TABLE> | |
228 <TR><TD>Match Rank:</TD><TD>2</TD></TR> | |
229 <TR><TD>Score:</TD><TD>0.80</TD</TR> | |
230 <TR><TD>Offset:</TD><TD>0</TD</TR> | |
231 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR> | |
232 <TR><TD>Alignment:</TD><TD><FONT face="courier">CCCTAATG--</FONT><BR><FONT face="courier">CCCTAATGAA</FONT></TD></TR></TABLE> | |
233 </TD><TD> | |
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344 | |
345 </TD></TR></TABLE> | |
346 </TD></TR> | |
347 <TR><TD> | |
348 <H4>HNRNPA1(RRM)/Homo_sapiens-RNCMPT00022-PBM/HughesRNA</H4> | |
349 <TABLE><TR><TD> | |
350 <TABLE> | |
351 <TR><TD>Match Rank:</TD><TD>3</TD></TR> | |
352 <TR><TD>Score:</TD><TD>0.79</TD</TR> | |
353 <TR><TD>Offset:</TD><TD>-1</TD</TR> | |
354 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR> | |
355 <TR><TD>Alignment:</TD><TD><FONT face="courier">-CCCTAATG</FONT><BR><FONT face="courier">TCCCTAN--</FONT></TD></TR></TABLE> | |
356 </TD><TD> | |
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459 </TD></TR> | |
460 <TR><TD> | |
461 <H4>TBF1/MA0403.1/Jaspar</H4> | |
462 <TABLE><TR><TD> | |
463 <TABLE> | |
464 <TR><TD>Match Rank:</TD><TD>4</TD></TR> | |
465 <TR><TD>Score:</TD><TD>0.77</TD</TR> | |
466 <TR><TD>Offset:</TD><TD>-2</TD</TR> | |
467 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR> | |
468 <TR><TD>Alignment:</TD><TD><FONT face="courier">--CCCTAATG</FONT><BR><FONT face="courier">AACCCTAA--</FONT></TD></TR></TABLE> | |
469 </TD><TD> | |
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581 </TD></TR></TABLE> | |
582 </TD></TR> | |
583 <TR><TD> | |
584 <H4>TBF1/MA0403.1/Jaspar</H4> | |
585 <TABLE><TR><TD> | |
586 <TABLE> | |
587 <TR><TD>Match Rank:</TD><TD>5</TD></TR> | |
588 <TR><TD>Score:</TD><TD>0.77</TD</TR> | |
589 <TR><TD>Offset:</TD><TD>-2</TD</TR> | |
590 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR> | |
591 <TR><TD>Alignment:</TD><TD><FONT face="courier">--CCCTAATG</FONT><BR><FONT face="courier">AACCCTAA--</FONT></TD></TR></TABLE> | |
592 </TD><TD> | |
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705 </TD></TR> | |
706 <TR><TD> | |
707 <H4>HNRNPA2B1(RRM)/Homo_sapiens-RNCMPT00024-PBM/HughesRNA</H4> | |
708 <TABLE><TR><TD> | |
709 <TABLE> | |
710 <TR><TD>Match Rank:</TD><TD>6</TD></TR> | |
711 <TR><TD>Score:</TD><TD>0.77</TD</TR> | |
712 <TR><TD>Offset:</TD><TD>-1</TD</TR> | |
713 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR> | |
714 <TR><TD>Alignment:</TD><TD><FONT face="courier">-CCCTAATG</FONT><BR><FONT face="courier">TCCCTAN--</FONT></TD></TR></TABLE> | |
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817 </TD></TR></TABLE> | |
818 </TD></TR> | |
819 <TR><TD> | |
820 <H4>TBP3/MA1355.1/Jaspar</H4> | |
821 <TABLE><TR><TD> | |
822 <TABLE> | |
823 <TR><TD>Match Rank:</TD><TD>7</TD></TR> | |
824 <TR><TD>Score:</TD><TD>0.76</TD</TR> | |
825 <TR><TD>Offset:</TD><TD>-7</TD</TR> | |
826 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR> | |
827 <TR><TD>Alignment:</TD><TD><FONT face="courier">-------CCCTAATG</FONT><BR><FONT face="courier">AATTAAACCCTAATT</FONT></TD></TR></TABLE> | |
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990 </TD></TR></TABLE> | |
991 </TD></TR> | |
992 <TR><TD> | |
993 <H4>TRB2/MA1073.1/Jaspar</H4> | |
994 <TABLE><TR><TD> | |
995 <TABLE> | |
996 <TR><TD>Match Rank:</TD><TD>8</TD></TR> | |
997 <TR><TD>Score:</TD><TD>0.75</TD</TR> | |
998 <TR><TD>Offset:</TD><TD>-2</TD</TR> | |
999 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR> | |
1000 <TR><TD>Alignment:</TD><TD><FONT face="courier">--CCCTAATG</FONT><BR><FONT face="courier">TGCCCTAA--</FONT></TD></TR></TABLE> | |
1001 </TD><TD> | |
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1113 </TD></TR></TABLE> | |
1114 </TD></TR> | |
1115 <TR><TD> | |
1116 <H4>RPH1/MA0372.1/Jaspar</H4> | |
1117 <TABLE><TR><TD> | |
1118 <TABLE> | |
1119 <TR><TD>Match Rank:</TD><TD>9</TD></TR> | |
1120 <TR><TD>Score:</TD><TD>0.75</TD</TR> | |
1121 <TR><TD>Offset:</TD><TD>-2</TD</TR> | |
1122 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR> | |
1123 <TR><TD>Alignment:</TD><TD><FONT face="courier">--CCCTAATG</FONT><BR><FONT face="courier">ACCCCTAA--</FONT></TD></TR></TABLE> | |
1124 </TD><TD> | |
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1236 </TD></TR></TABLE> | |
1237 </TD></TR> | |
1238 <TR><TD> | |
1239 <H4>RPH1/MA0372.1/Jaspar</H4> | |
1240 <TABLE><TR><TD> | |
1241 <TABLE> | |
1242 <TR><TD>Match Rank:</TD><TD>10</TD></TR> | |
1243 <TR><TD>Score:</TD><TD>0.75</TD</TR> | |
1244 <TR><TD>Offset:</TD><TD>-2</TD</TR> | |
1245 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR> | |
1246 <TR><TD>Alignment:</TD><TD><FONT face="courier">--CCCTAATG</FONT><BR><FONT face="courier">ACCCCTAA--</FONT></TD></TR></TABLE> | |
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