Mercurial > repos > iuc > homer_scanmotifgenomewide

comparison test-data/motif_test1/homerResults/motif8.info.html @ 0:db456c398880 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
author iuc
date Mon, 13 Dec 2021 15:13:33 +0000
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1 <HTML><HEAD><TITLE>Motif 8</TITLE></HEAD>
2 <H2>Information for 5-GATGATGC (Motif 8)</H2>
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47
48 <BR>
49 Reverse Opposite:<BR/><svg width="205" height="50">
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92 </svg>
93 <BR>
94 <TABLE border="1" cellpading="0" cellspacing="0">
95 <TR><TD>p-value:</TD><TD>1e-1</TD></TR>
96 <TR><TD>log p-value:</TD><TD>-2.889e+00</TD></TR>
97 <TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR>
98 <TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR>
99 <TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR>
100 <TR><TD>Number of Background Sequences with motif</TD><TD>223.5</TD></TR>
101 <TR><TD>Percentage of Background Sequences with motif</TD><TD>5.58%</TD></TR>
102 <TR><TD>Average Position of motif in Targets</TD><TD>117.0 +/- 0.0bp</TD></TR>
103 <TR><TD>Average Position of motif in Background</TD><TD>93.3 +/- 78.0bp</TD></TR>
104 <TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR>
105 <TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR>
106 <TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif8.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif8RV.motif">reverse opposite</A></TD></TR>
107 <TR><TD>SVG Files for Logos:</TD><TD><A HREF="motif8.logo.svg">forward logo</A><BR/><A HREF="motif8RV.logo.svg">reverse opposite</A></TD></TR>
108 </TABLE>
109 <H3>Matches to Known Motifs</H3>
110 <TABLE border="1" cellpading="0" cellspacing="0">
111 <TR><TD>
112 <H4>AGL42/MA1201.1/Jaspar</H4>
113 <TABLE><TR><TD>
114 <TABLE>
115 <TR><TD>Match Rank:</TD><TD>1</TD></TR>
116 <TR><TD>Score:</TD><TD>0.90</TD</TR>
117 <TR><TD>Offset:</TD><TD>0</TD</TR>
118 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
119 <TR><TD>Alignment:</TD><TD><FONT face="courier">GATGATGC</FONT><BR><FONT face="courier">GATGATG-</FONT></TD></TR></TABLE>
120 </TD><TD>
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212 </TD></TR></TABLE>
213 </TD></TR>
214 <TR><TD>
215 <H4>RBM47(RRM)/Gallus_gallus-RNCMPT00279-PBM/HughesRNA</H4>
216 <TABLE><TR><TD>
217 <TABLE>
218 <TR><TD>Match Rank:</TD><TD>2</TD></TR>
219 <TR><TD>Score:</TD><TD>0.83</TD</TR>
220 <TR><TD>Offset:</TD><TD>0</TD</TR>
221 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
222 <TR><TD>Alignment:</TD><TD><FONT face="courier">GATGATGC</FONT><BR><FONT face="courier">GATGATN-</FONT></TD></TR></TABLE>
223 </TD><TD>
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316 </TD></TR>
317 <TR><TD>
318 <H4>RIN(RRM)/Drosophila_melanogaster-RNCMPT00138-PBM/HughesRNA</H4>
319 <TABLE><TR><TD>
320 <TABLE>
321 <TR><TD>Match Rank:</TD><TD>3</TD></TR>
322 <TR><TD>Score:</TD><TD>0.83</TD</TR>
323 <TR><TD>Offset:</TD><TD>-1</TD</TR>
324 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
325 <TR><TD>Alignment:</TD><TD><FONT face="courier">-GATGATGC</FONT><BR><FONT face="courier">AGATGATG-</FONT></TD></TR></TABLE>
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430 <TR><TD>
431 <H4>ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer</H4>
432 <TABLE><TR><TD>
433 <TABLE>
434 <TR><TD>Match Rank:</TD><TD>4</TD></TR>
435 <TR><TD>Score:</TD><TD>0.79</TD</TR>
436 <TR><TD>Offset:</TD><TD>-3</TD</TR>
437 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
438 <TR><TD>Alignment:</TD><TD><FONT face="courier">---GATGATGC</FONT><BR><FONT face="courier">GATGATGATG-</FONT></TD></TR></TABLE>
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563 <TR><TD>
564 <H4>Rbm47(RRM)/Xenopus_tropicalis-RNCMPT00280-PBM/HughesRNA</H4>
565 <TABLE><TR><TD>
566 <TABLE>
567 <TR><TD>Match Rank:</TD><TD>5</TD></TR>
568 <TR><TD>Score:</TD><TD>0.78</TD</TR>
569 <TR><TD>Offset:</TD><TD>0</TD</TR>
570 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
571 <TR><TD>Alignment:</TD><TD><FONT face="courier">GATGATGC</FONT><BR><FONT face="courier">GATGATN-</FONT></TD></TR></TABLE>
572 </TD><TD>
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665 </TD></TR>
666 <TR><TD>
667 <H4>RBP1-LIKE(RRM)/Drosophila_melanogaster-RNCMPT00127-PBM/HughesRNA</H4>
668 <TABLE><TR><TD>
669 <TABLE>
670 <TR><TD>Match Rank:</TD><TD>6</TD></TR>
671 <TR><TD>Score:</TD><TD>0.77</TD</TR>
672 <TR><TD>Offset:</TD><TD>-1</TD</TR>
673 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
674 <TR><TD>Alignment:</TD><TD><FONT face="courier">-GATGATGC</FONT><BR><FONT face="courier">CGTTGAT--</FONT></TD></TR></TABLE>
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778 </TD></TR>
779 <TR><TD>
780 <H4>ATF4/MA0833.1/Jaspar</H4>
781 <TABLE><TR><TD>
782 <TABLE>
783 <TR><TD>Match Rank:</TD><TD>7</TD></TR>
784 <TR><TD>Score:</TD><TD>0.75</TD</TR>
785 <TR><TD>Offset:</TD><TD>-1</TD</TR>
786 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
787 <TR><TD>Alignment:</TD><TD><FONT face="courier">-GATGATGC----</FONT><BR><FONT face="courier">GGATGATGCAATA</FONT></TD></TR></TABLE>
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932 <TR><TD>
933 <H4>Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer</H4>
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935 <TABLE>
936 <TR><TD>Match Rank:</TD><TD>8</TD></TR>
937 <TR><TD>Score:</TD><TD>0.74</TD</TR>
938 <TR><TD>Offset:</TD><TD>1</TD</TR>
939 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
940 <TR><TD>Alignment:</TD><TD><FONT face="courier">GATGATGC---</FONT><BR><FONT face="courier">-MTGATGCAAT</FONT></TD></TR></TABLE>
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1064 </TD></TR>
1065 <TR><TD>
1066 <H4>Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer</H4>
1067 <TABLE><TR><TD>
1068 <TABLE>
1069 <TR><TD>Match Rank:</TD><TD>9</TD></TR>
1070 <TR><TD>Score:</TD><TD>0.73</TD</TR>
1071 <TR><TD>Offset:</TD><TD>1</TD</TR>
1072 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
1073 <TR><TD>Alignment:</TD><TD><FONT face="courier">GATGATGC---</FONT><BR><FONT face="courier">-ATGATGCAAT</FONT></TD></TR></TABLE>
1074 </TD><TD>
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1198 <TR><TD>
1199 <H4>AARE(HLH)/mES-cMyc-ChIP-Seq/Homer</H4>
1200 <TABLE><TR><TD>
1201 <TABLE>
1202 <TR><TD>Match Rank:</TD><TD>10</TD></TR>
1203 <TR><TD>Score:</TD><TD>0.70</TD</TR>
1204 <TR><TD>Offset:</TD><TD>2</TD</TR>
1205 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
1206 <TR><TD>Alignment:</TD><TD><FONT face="courier">GATGATGC----</FONT><BR><FONT face="courier">--TGATGCAATC</FONT></TD></TR></TABLE>
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