Mercurial > repos > iuc > homer_scanmotifgenomewide

diff test-data/motif_test1/homerResults/motif8.info.html @ 0:db456c398880 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
author: iuc
date: Mon, 13 Dec 2021 15:13:33 +0000
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/motif_test1/homerResults/motif8.info.html	Mon Dec 13 15:13:33 2021 +0000
@@ -0,0 +1,1343 @@
+<HTML><HEAD><TITLE>Motif 8</TITLE></HEAD>
+<H2>Information for 5-GATGATGC (Motif 8)</H2>
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+<BR>
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+</svg>
+<BR>
+<TABLE border="1" cellpading="0" cellspacing="0">
+<TR><TD>p-value:</TD><TD>1e-1</TD></TR>
+<TR><TD>log p-value:</TD><TD>-2.889e+00</TD></TR>
+<TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR>
+<TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR>
+<TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR>
+<TR><TD>Number of Background Sequences with motif</TD><TD>223.5</TD></TR>
+<TR><TD>Percentage of Background Sequences with motif</TD><TD>5.58%</TD></TR>
+<TR><TD>Average Position of motif in Targets</TD><TD>117.0 +/- 0.0bp</TD></TR>
+<TR><TD>Average Position of motif in Background</TD><TD>93.3 +/- 78.0bp</TD></TR>
+<TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR>
+<TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR>
+<TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif8.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif8RV.motif">reverse opposite</A></TD></TR>
+<TR><TD>SVG Files for Logos:</TD><TD><A HREF="motif8.logo.svg">forward logo</A><BR/><A HREF="motif8RV.logo.svg">reverse opposite</A></TD></TR>
+</TABLE>
+<H3>Matches to Known Motifs</H3>
+<TABLE border="1" cellpading="0" cellspacing="0">
+<TR><TD>
+<H4>AGL42/MA1201.1/Jaspar</H4>
+<TABLE><TR><TD>
+<TABLE>
+<TR><TD>Match Rank:</TD><TD>1</TD></TR>
+<TR><TD>Score:</TD><TD>0.90</TD</TR>
+<TR><TD>Offset:</TD><TD>0</TD</TR>
+<TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
+<TR><TD>Alignment:</TD><TD><FONT face="courier">GATGATGC</FONT><BR><FONT face="courier">GATGATG-</FONT></TD></TR></TABLE>
+</TD><TD>
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+</TD></TR></TABLE>
+</TD></TR>
+<TR><TD>
+<H4>RBM47(RRM)/Gallus_gallus-RNCMPT00279-PBM/HughesRNA</H4>
+<TABLE><TR><TD>
+<TABLE>
+<TR><TD>Match Rank:</TD><TD>2</TD></TR>
+<TR><TD>Score:</TD><TD>0.83</TD</TR>
+<TR><TD>Offset:</TD><TD>0</TD</TR>
+<TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
+<TR><TD>Alignment:</TD><TD><FONT face="courier">GATGATGC</FONT><BR><FONT face="courier">GATGATN-</FONT></TD></TR></TABLE>
+</TD><TD>
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+<H4>ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer</H4>
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+<H4>ATF4/MA0833.1/Jaspar</H4>
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+<H4>Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer</H4>
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+<TR><TD>Match Rank:</TD><TD>8</TD></TR>
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+<H4>Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer</H4>
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+<TR><TD>Score:</TD><TD>0.73</TD</TR>
+<TR><TD>Offset:</TD><TD>1</TD</TR>
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+<H4>AARE(HLH)/mES-cMyc-ChIP-Seq/Homer</H4>
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+<TR><TD>Match Rank:</TD><TD>10</TD></TR>
+<TR><TD>Score:</TD><TD>0.70</TD</TR>
+<TR><TD>Offset:</TD><TD>2</TD</TR>
+<TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
+<TR><TD>Alignment:</TD><TD><FONT face="courier">GATGATGC----</FONT><BR><FONT face="courier">--TGATGCAATC</FONT></TD></TR></TABLE>
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