Mercurial > repos > iuc > homer_scanmotifgenomewide

diff test-data/motif_test1/homerResults/motif8.similar.html @ 0:db456c398880 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
author iuc
date Mon, 13 Dec 2021 15:13:33 +0000
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/motif_test1/homerResults/motif8.similar.html	Mon Dec 13 15:13:33 2021 +0000
@@ -0,0 +1,112 @@
+<HTML><HEAD><TITLE>motif8</TITLE></HEAD>
+<H2>Information for motif8</H2>
+<svg width="205" height="50">
+ <g font-family="Arial" font-weight="bold" font-size="66.5">
+  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,2,49)">A</text>
+  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,0,44)">C</text>
+  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,1,39)">T</text>
+  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.700,0,34)">G</text>
+  
+  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,25,49)">C</text>
+  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,25,44)">G</text>
+  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,26,39)">T</text>
+  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.700,27,34)">A</text>
+  
+  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,52,49)">A</text>
+  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,50,44)">C</text>
+  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,50,39)">G</text>
+  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.700,51,34)">T</text>
+  
+  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,77,49)">A</text>
+  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,75,44)">C</text>
+  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,76,39)">T</text>
+  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.700,75,34)">G</text>
+  
+  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,100,49)">C</text>
+  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,100,44)">G</text>
+  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,101,39)">T</text>
+  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.700,102,34)">A</text>
+  
+  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,127,49)">A</text>
+  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,125,44)">C</text>
+  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,125,39)">G</text>
+  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.700,126,34)">T</text>
+  
+  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,152,49)">A</text>
+  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,150,44)">C</text>
+  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,151,39)">T</text>
+  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.700,150,34)">G</text>
+  
+  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,177,49)">A</text>
+  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,175,44)">G</text>
+  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,176,39)">T</text>
+  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.700,175,34)">C</text>
+  
+ </g>
+</svg>
+<BR/>
+Reverse Opposite:<BR/><svg width="205" height="50">
+ <g font-family="Arial" font-weight="bold" font-size="66.5">
+  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,2,49)">A</text>
+  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,0,44)">C</text>
+  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,1,39)">T</text>
+  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.700,0,34)">G</text>
+  
+  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,27,49)">A</text>
+  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,25,44)">G</text>
+  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,26,39)">T</text>
+  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.700,25,34)">C</text>
+  
+  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,50,49)">C</text>
+  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,50,44)">G</text>
+  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,51,39)">T</text>
+  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.700,52,34)">A</text>
+  
+  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,77,49)">A</text>
+  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,75,44)">C</text>
+  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,75,39)">G</text>
+  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.700,76,34)">T</text>
+  
+  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,102,49)">A</text>
+  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,100,44)">G</text>
+  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,101,39)">T</text>
+  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.700,100,34)">C</text>
+  
+  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,125,49)">C</text>
+  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,125,44)">G</text>
+  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,126,39)">T</text>
+  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.700,127,34)">A</text>
+  
+  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,152,49)">A</text>
+  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,150,44)">C</text>
+  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,150,39)">G</text>
+  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.700,151,34)">T</text>
+  
+  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,177,49)">A</text>
+  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,175,44)">G</text>
+  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,176,39)">T</text>
+  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.700,175,34)">C</text>
+  
+ </g>
+</svg>
+<BR/>
+<TABLE border="1" cellpading="0" cellspacing="0">
+<TR><TD>p-value:</TD><TD>1e-1</TD></TR>
+<TR><TD>log p-value:</TD><TD>-2.889e+00</TD></TR>
+<TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR>
+<TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR>
+<TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR>
+<TR><TD>Number of Background Sequences with motif</TD><TD>223.5</TD></TR>
+<TR><TD>Percentage of Background Sequences with motif</TD><TD>5.58%</TD></TR>
+<TR><TD>Average Position of motif in Targets</TD><TD>117.0 +/- 0.0bp</TD></TR>
+<TR><TD>Average Position of motif in Background</TD><TD>93.3 +/- 78.0bp</TD></TR>
+<TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR>
+<TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR>
+<TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif8.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif8RV.motif">reverse opposite</A></TD></TR>
+</TABLE>
+<H3>Similar de novo motifs found</H3>
+<TABLE border="1" cellpading="0" cellspacing="0">
+<TR><TD>Rank</TD><TD>Match Score</TD><TD>Redundant Motif</TD><TD>P-value</TD><TD>log P-value</TD><TD>% of Targets</TD><TD>% of Background</TD><TD>Motif file</TD></TR>
+</TABLE>
+<P></P>
+</BODY></HTML>