Mercurial > repos > iuc > humann
comparison humann.xml @ 3:037c0b25c041 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann commit 32d4c566afe55179531fdd106dc5a996cc09bbb1
| author | iuc |
|---|---|
| date | Wed, 29 Mar 2023 19:59:38 +0000 |
| parents | 2cd76b089570 |
| children | 95bf7479d53c |
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| 2:2cd76b089570 | 3:037c0b25c041 |
|---|---|
| 349 </inputs> | 349 </inputs> |
| 350 <outputs> | 350 <outputs> |
| 351 <data name="gene_families_tsv" format="tabular" from_work_dir="output/*_genefamilies.tsv" label="${tool.name} on ${on_string}: Gene families and their abundance" > | 351 <data name="gene_families_tsv" format="tabular" from_work_dir="output/*_genefamilies.tsv" label="${tool.name} on ${on_string}: Gene families and their abundance" > |
| 352 <filter>out['output_format'] == "tsv"</filter> | 352 <filter>out['output_format'] == "tsv"</filter> |
| 353 </data> | 353 </data> |
| 354 <data name="gene_families_biom" format="biom1" from_work_dir="output/*_genefamilies.biom" label="${tool.name} on ${on_string}: Gene families and their abundance" > | 354 <data name="gene_families_biom" format="biom1" from_work_dir="output/*_genefamilies.biom" label="${tool.name} on ${on_string}: Gene families and their abundance as biom"> |
| 355 <filter>out['output_format'] == "biom"</filter> | 355 <filter>out['output_format'] == "biom"</filter> |
| 356 </data> | 356 </data> |
| 357 <data name="pathcoverage_tsv" format="tabular" from_work_dir="output/*_pathcoverage.tsv" label="${tool.name} on ${on_string}: Pathways and their coverage" > | 357 <data name="pathcoverage_tsv" format="tabular" from_work_dir="output/*_pathcoverage.tsv" label="${tool.name} on ${on_string}: Pathways and their coverage" > |
| 358 <filter>out['output_format'] == "tsv"</filter> | 358 <filter>out['output_format'] == "tsv"</filter> |
| 359 </data> | 359 </data> |
| 360 <data name="pathcoverage_biom" format="biom1" from_work_dir="output/*_pathcoverage.biom" label="${tool.name} on ${on_string}: Pathways and their coverage" > | 360 <data name="pathcoverage_biom" format="biom1" from_work_dir="output/*_pathcoverage.biom" label="${tool.name} on ${on_string}: Pathways and their coverage as biom"> |
| 361 <filter>out['output_format'] == "biom"</filter> | 361 <filter>out['output_format'] == "biom"</filter> |
| 362 </data> | 362 </data> |
| 363 <data name="pathabundance_tsv" format="tabular" from_work_dir="output/*_pathabundance.tsv" label="${tool.name} on ${on_string}: Pathways and their abundance" > | 363 <data name="pathabundance_tsv" format="tabular" from_work_dir="output/*_pathabundance.tsv" label="${tool.name} on ${on_string}: Pathways and their abundance" > |
| 364 <filter>out['output_format'] == "tsv"</filter> | 364 <filter>out['output_format'] == "tsv"</filter> |
| 365 </data> | 365 </data> |
| 366 <data name="pathabundance_biom" format="biom1" from_work_dir="output/*_pathabundance.biom" label="${tool.name} on ${on_string}: Pathways and their abundance" > | 366 <data name="pathabundance_biom" format="biom1" from_work_dir="output/*_pathabundance.biom" label="${tool.name} on ${on_string}: Pathways and their abundance as biom"> |
| 367 <filter>out['output_format'] == "biom"</filter> | 367 <filter>out['output_format'] == "biom"</filter> |
| 368 </data> | 368 </data> |
| 369 <data format="txt" name="log" label="${tool.name} on ${on_string}: Log"/> | 369 <data format="txt" name="log" label="${tool.name} on ${on_string}: Log"/> |
| 370 <data format="tabular" name="metaphlan_bowtie2" from_work_dir="output/*_temp/*_metaphlan_bowtie2.txt" label="${tool.name} on ${on_string}: MetaPhlAn Bowtie2 output" > | 370 <data format="tabular" name="metaphlan_bowtie2" from_work_dir="output/*_temp/*_metaphlan_bowtie2.txt" label="${tool.name} on ${on_string}: MetaPhlAn Bowtie2 output" > |
| 371 <filter>out['intermediate_temp'] and "metaphlan_bowtie2" in out['intermediate_temp']</filter> | 371 <filter>out['intermediate_temp'] and "metaphlan_bowtie2" in out['intermediate_temp']</filter> |