diff humann.xml @ 4:95bf7479d53c draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann commit 0a3abeca0535457ddf39c394001d61cd2e45afdd

--- a/humann.xml	Wed Mar 29 19:59:38 2023 +0000
+++ b/humann.xml	Mon Apr 24 18:59:49 2023 +0000
@@ -12,7 +12,8 @@
                     <when value="cached">
                         <param name="cached_db" label="Cached database with clade-specific marker genes" type="select">
                             <options from_data_table="metaphlan_database">
-                                <validator message="No MetaPhlAn database is available" type="no_options" />
+                                <filter type="regexp" column="0" value=".*(vOct22_SGB|TOY|demo-db).*"/>
+                                <validator message="No MetaPhlAn database is available" type="no_options"/>
                             </options>
                         </param>
                     </when>
@@ -56,7 +57,7 @@
         <xml name="nucleotide_search">
             <section name="nucleotide_search" title="Nucleotide search / Mapping reads to community pangenomes"  expanded="true">
                 <conditional name="nucleotide_db">
-                    <param name="selector" type="select" label="Nucleotide database" help="For locally cached databases, you need first to execute the tool to download HUMAnN2 databases">
+                    <param name="selector" type="select" label="Nucleotide database" help="For locally cached databases, you need first to execute the tool to download HUMAnN databases">
                         <option value="cached" selected="true">Locally cached</option>
                         <option value="history">From history</option>
                     </param>
@@ -102,7 +103,7 @@
         <xml name="translated_search">
             <section name="translated_search" title="Translated search / Aligning unmapped reads to a protein database" expanded="true">
                 <conditional name="protein_db">
-                    <param name="selector" type="select" label="Protein database" help="For locally cached databases, you need first to execute the tool to download HUMAnN2 databases">
+                    <param name="selector" type="select" label="Protein database" help="For locally cached databases, you need first to execute the tool to download HUMAnN databases">
                         <option value="cached" selected="true">Locally cached</option>
                         <option value="history">From history</option>
                     </param>