view humann2_genefamilies_genus_level.xml @ 1:5628423eb63e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann2 commit 11ee7ac206d41894c0b6a11f2439aaea490824f0

<tool id="humann2_genefamilies_genus_level" name="Create a genus level gene families file" version="@WRAPPER_VERSION@.0">
    <description></description>
    <macros>
        <import>humann2_macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <expand macro="version"/>
    <command detect_errors="exit_code"><![CDATA[
humann2_genefamilies_genus_level 
    --input '$input'
    --output '$output'
    ]]></command>
    <inputs>
        <param argument="--input" type="data" format="tsv,tabular" label="Gene families input table"/>
    </inputs>
    <outputs>
        <data format="tsv" name="output" label="${tool.name} on ${on_string}"/>
    </outputs>
    <tests>
        <test>
            <param name="input" value="demo_genefamilies.tsv"/>
            <output name="output" md5="caaa6b18bffc15220c676df260545e46"/>
        </test>
    </tests>
    <help><![CDATA[
@HELP_HEADER@

By default, the gene families and pathways output files from HUMAnN2 are species level. This tool generates genus level gene families
    ]]></help>
    <expand macro="citations"/>
</tool>