comparison humann2_join_tables.xml @ 4:12103efd0e34 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann2 commit f24d561fc65cc7204e53a6a65014130aaa65aa57"

3:47f3c9a16649

<tool id="humann2_join_tables" name="Join" version="@WRAPPER_VERSION@.0">
    <description>HUMAnN2 generated tables</description>
    <macros>
        <import>humann2_macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <expand macro="version"/>
    <command detect_errors="exit_code"><![CDATA[
mkdir tmp_dir
&&
#for $table in $input_table
    cp '$table' 'tmp_dir' &&
#end for
humann2_join_tables
    -i 'tmp_dir'
    -o '$joined_table'
    ]]></command>

4:12103efd0e34

<tool id="humann2_join_tables" name="Join" version="@WRAPPER_VERSION@.1">
    <description>HUMAnN2 generated tables</description>
    <macros>
        <import>humann2_macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <expand macro="version"/>
    <command detect_errors="exit_code"><![CDATA[
mkdir tmp_dir
&&
#for $table in $input_table
    #set orig_filename=$table.element_identifier
    #set new_filename='_'.join($orig_filename.split(' '))
    cp '$table' 'tmp_dir/$new_filename' &&
#end for
humann2_join_tables
    -i 'tmp_dir'
    -o '$joined_table'
    ]]></command>