Mercurial > repos > iuc > humann2_join_tables
comparison humann2_join_tables.xml @ 1:9ada8e95bdd0 draft
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
| author | iuc |
|---|---|
| date | Tue, 01 Aug 2017 07:58:05 -0400 |
| parents | 14d5bf0d63a0 |
| children | 12103efd0e34 |
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| 0:14d5bf0d63a0 | 1:9ada8e95bdd0 |
|---|---|
| 4 <import>humann2_macros.xml</import> | 4 <import>humann2_macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements"/> | 6 <expand macro="requirements"/> |
| 7 <expand macro="version"/> | 7 <expand macro="version"/> |
| 8 <command detect_errors="exit_code"><![CDATA[ | 8 <command detect_errors="exit_code"><![CDATA[ |
| 9 mkdir tmp_dir | 9 mkdir tmp_dir |
| 10 | 10 && |
| 11 && | 11 #for $table in $input_table |
| 12 | 12 cp '$table' 'tmp_dir' && |
| 13 #for $table in $input_table | 13 #end for |
| 14 cp '$table' 'tmp_dir' && | 14 humann2_join_tables |
| 15 #end for | 15 -i 'tmp_dir' |
| 16 | 16 -o '$joined_table' |
| 17 humann2_join_tables | |
| 18 -i 'tmp_dir' | |
| 19 -o '$joined_table' | |
| 20 ]]></command> | 17 ]]></command> |
| 21 <inputs> | 18 <inputs> |
| 22 <param name="input_table" type="data" format="tsv,tabular" multiple="true" label="Gene/pathway table"/> | 19 <param name="input_table" type="data" format="tsv,tabular" multiple="true" label="Gene/pathway table"/> |
| 23 </inputs> | 20 </inputs> |
| 24 <outputs> | 21 <outputs> |