# HG changeset patch # User iuc # Date 1592567224 14400 # Node ID 12103efd0e3439dd89c3329563d10b753cf4737c # Parent 47f3c9a1664994a7a7d5433e711acc057e29ae83 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann2 commit f24d561fc65cc7204e53a6a65014130aaa65aa57" diff -r 47f3c9a16649 -r 12103efd0e34 humann2_join_tables.xml --- a/humann2_join_tables.xml Sat Jan 25 18:23:10 2020 -0500 +++ b/humann2_join_tables.xml Fri Jun 19 07:47:04 2020 -0400 @@ -1,4 +1,4 @@ - + HUMAnN2 generated tables humann2_macros.xml @@ -9,7 +9,9 @@ mkdir tmp_dir && #for $table in $input_table - cp '$table' 'tmp_dir' && + #set orig_filename=$table.element_identifier + #set new_filename='_'.join($orig_filename.split(' ')) + cp '$table' 'tmp_dir/$new_filename' && #end for humann2_join_tables -i 'tmp_dir'