# HG changeset patch
# User iuc
# Date 1592567224 14400
# Node ID 12103efd0e3439dd89c3329563d10b753cf4737c
# Parent  47f3c9a1664994a7a7d5433e711acc057e29ae83
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann2 commit f24d561fc65cc7204e53a6a65014130aaa65aa57"

diff -r 47f3c9a16649 -r 12103efd0e34 humann2_join_tables.xml
--- a/humann2_join_tables.xml	Sat Jan 25 18:23:10 2020 -0500
+++ b/humann2_join_tables.xml	Fri Jun 19 07:47:04 2020 -0400
@@ -1,4 +1,4 @@
-<tool id="humann2_join_tables" name="Join" version="@WRAPPER_VERSION@.0">
+<tool id="humann2_join_tables" name="Join" version="@WRAPPER_VERSION@.1">
     <description>HUMAnN2 generated tables</description>
     <macros>
         <import>humann2_macros.xml</import>
@@ -9,7 +9,9 @@
 mkdir tmp_dir
 &&
 #for $table in $input_table
-    cp '$table' 'tmp_dir' &&
+    #set orig_filename=$table.element_identifier
+    #set new_filename='_'.join($orig_filename.split(' '))
+    cp '$table' 'tmp_dir/$new_filename' &&
 #end for
 humann2_join_tables
     -i 'tmp_dir'