Mercurial > repos > iuc > humann2_split_stratified_table
annotate humann2_split_stratified_table.xml @ 1:792a87240bcd draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann2 commit 11ee7ac206d41894c0b6a11f2439aaea490824f0
author | iuc |
---|---|
date | Thu, 09 Nov 2017 13:42:51 -0500 |
parents | b58d3f965a49 |
children | 28763c8b43f8 |
rev | line source |
---|---|
0
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
1 <tool id="humann2_split_stratified_table" name="Split stratified table" version="@WRAPPER_VERSION@.0"> |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
2 <description></description> |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
3 <macros> |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
4 <import>humann2_macros.xml</import> |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
5 </macros> |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
6 <expand macro="requirements"/> |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
7 <expand macro="version"/> |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
8 <command detect_errors="exit_code"><![CDATA[ |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
9 humann2_split_stratified_table |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
10 --input '$input' |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
11 --output 'output' |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
12 ]]></command> |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
13 <inputs> |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
14 <param argument="--input" type="data" format="tsv,tabular,biom1" label="Stratified input table"/> |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
15 </inputs> |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
16 <outputs> |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
17 <data format="tsv" name="stratified" from_work_dir="output/*_stratified*" label="${tool.name} on ${on_string}: Stratified"/> |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
18 <data format="tsv" name="unstratified" from_work_dir="output/*_unstratified*" label="${tool.name} on ${on_string}: Unstratified"/> |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
19 </outputs> |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
20 <tests> |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
21 <test> |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
22 <param name="input" value="demo_genefamilies.tsv"/> |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
23 <output name="stratified" md5="308551b7ad06f6704d3dbb47db341089"/> |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
24 <output name="unstratified" md5="28a7254bd88afd42bdb4e41b6ae4253e"/> |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
25 </test> |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
26 </tests> |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
27 <help><![CDATA[ |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
28 @HELP_HEADER@ |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
29 |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
30 This utility will split a table into two files (one stratified and one unstratified). |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
31 ]]></help> |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
32 <expand macro="citations"/> |
b58d3f965a49
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
33 </tool> |