view humann2_macros.xml @ 4:3115a530686e draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann2 commit 55eb503f50c54695ec36c3d4671c2b3e64d05f40"

<?xml version="1.0"?>
<macros>
    <token name="@WRAPPER_VERSION@">0.11.1</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@WRAPPER_VERSION@">humann2</requirement>
            <yield/>
        </requirements>
    </xml>
    
    <xml name="stdio">
        <stdio>
            <regex match="Failed to allocate sufficient memory." source="stderr" level="fatal_oom" description="Out of memory error occurred" />
            <regex match="MemoryError" source="stderr" level="fatal_oom" description="Out of memory error occurred" />
        </stdio>
    </xml>
    <xml name="version">
        <version_command>humann2 --version</version_command>
    </xml>
    <token name="@HELP_HEADER@">
**What it does**

HUMAnN is a pipeline for efficiently and accuretly profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data. 

Read more about the tool: http://huttenhower.sph.harvard.edu/humann2/manual.
    </token>
    <xml name="citations">
        <citations>
            <citation type="doi">10.1371/journal.pcbi.1002358</citation>
        </citations>
    </xml>
</macros>