comparison hyphy_absrel.xml @ 32:3f59ebfbfe3d draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit e74f0c1ed183da674db365c3a6ce320b0c08d9bc"

31:26de3a7b1cb9

<?xml version="1.0"?>
<tool id="hyphy_absrel" name="HyPhy-aBSREL" version="@VERSION@+galaxy1" profile="19.09">
    <description>adaptive Branch Site Random Effects Likelihood</description>
    <expand macro="bio_tools"/>
    <macros>
        <import>macros.xml</import>
    </macros>

            --multiple-hits $multiple_hits
        @ERRORS@
        ]]></command>
    <inputs>
        <expand macro="inputs"/>
        <param name="log" type="boolean" truevalue="" falsevalue="" label="Output aBSREL log to history"/>
        <expand macro="gencode"/>
        <param name="multiple_hits" type="select" argument="--multiple-hits" label="Include support for multiple nucleotide substitutions">
            <option value="None">Use standard models which permit only single nucleotide changes to occur instantly</option>
            <option value="Double">Include branch-specific rates for double nucleotide substitutions</option>
            <option value="Double+Triple">Include branch-specific rates for double and triple nucleotide substitutions</option>

32:3f59ebfbfe3d

<?xml version="1.0"?>
<tool id="hyphy_absrel" name="HyPhy-aBSREL" version="@TOOL_VERSION@+galaxy2" profile="19.09">
    <description>adaptive Branch Site Random Effects Likelihood</description>
    <expand macro="bio_tools"/>
    <macros>
        <import>macros.xml</import>
    </macros>

            --multiple-hits $multiple_hits
        @ERRORS@
        ]]></command>
    <inputs>
        <expand macro="inputs"/>
        <expand macro="gencode"/>
        <param name="multiple_hits" type="select" argument="--multiple-hits" label="Include support for multiple nucleotide substitutions">
            <option value="None">Use standard models which permit only single nucleotide changes to occur instantly</option>
            <option value="Double">Include branch-specific rates for double nucleotide substitutions</option>
            <option value="Double+Triple">Include branch-specific rates for double and triple nucleotide substitutions</option>