diff macros.xml @ 33:212c958f6cee draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"

--- a/macros.xml	Sat Nov 27 11:25:19 2021 +0000
+++ b/macros.xml	Wed Mar 30 00:15:54 2022 +0000
@@ -1,5 +1,6 @@
 <?xml version="1.0"?>
 <macros>
+    <token name="@TOOL_VERSION@">2.5.36</token>
     <xml name="inputs">
 	    <param name="input_file" type="data" format="fasta,fasta.gz,nex" label="Input FASTA or NEXUS file" help="If the input file type is NEXUS and it includes a valid newick tree, that tree will override an uploaded newick tree" />
         <param name="input_nhx" type="data" format="nhx,newick" optional="true" label="Input newick file"/>
@@ -144,7 +145,6 @@
             <yield/>
         </citations>
     </xml>
-    <token name="@TOOL_VERSION@">2.5.31</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">hyphy</requirement>
@@ -156,6 +156,16 @@
             <filter>advanced['save_alternative_model']</filter>
         </data>
     </xml>
+    <xml name="resample">
+        <param argument="--resample" type="integer" value="0" min="0" optional="true" label="Perform parametric bootstrap resampling to derive site-level null LRT distributions" help="Warning: This will result in a significantly slower analysis. This parameter specifies the maximum number of replicates per site." />
+    </xml>
+    <token name="@resample@"><![CDATA[
+            #if $resample:
+                --resample $resample
+            #end if
+        ]]>
+    </token>
+
     <token name="@INPUT_TREE@"><![CDATA[
             #if $input_nhx:
                 --tree input.nhx