Mercurial > repos > iuc > hyphy_annotate
diff test-data/absrel-out1.json @ 0:df56795c3d89 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
| author | iuc |
|---|---|
| date | Tue, 20 Apr 2021 10:29:30 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/absrel-out1.json Tue Apr 20 10:29:30 2021 +0000 @@ -0,0 +1,478 @@ +{ + "analysis":{ + "authors":"Sergei L Kosakovsky Pond, Ben Murrell, Steven Weaver and Temple iGEM / UCSD viral evolution group", + "citation":"Less Is More: An Adaptive Branch-Site Random Effects Model for Efficient Detection of Episodic Diversifying Selection (2015). Mol Biol Evol 32 (5): 1342-1353. v2.2 adds support for multiple-hit models", + "contact":"spond@temple.edu", + "info":"aBSREL (Adaptive branch-site random effects likelihood)\n uses an adaptive random effects branch-site model framework\n to test whether each branch has evolved under positive selection,\n using a procedure which infers an optimal number of rate categories per branch.", + "requirements":"in-frame codon alignment and a phylogenetic tree", + "version":"2.2" + }, + "branch attributes":{ + "0":{ + "Baboon":{ + "Baseline MG94xREV":0.001816807585564731, + "Baseline MG94xREV omega ratio":0, + "Corrected P-value":1, + "Full adaptive model":0.001810407118394509, + "LRT":0, + "Nucleotide GTR":0.001678881906620672, + "Rate Distributions": [ +[0, 1] + ], + "Rate classes":1, + "Uncorrected P-value":1, + "original name":"Baboon", + "rate at which 2 nucleotides are changed instantly within a single codon":0 + }, + "Cat":{ + "Baseline MG94xREV":0.2286001363527903, + "Baseline MG94xREV 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selection":{ + "order":5, + "timer":112 + } + } +} \ No newline at end of file