Mercurial > repos > iuc > hyphy_busted
comparison macros.xml @ 17:c92d5ec5d8d7 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f6cabbd9eb2eea9f5d44fe9836cc5f6d6087a839"
author | iuc |
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date | Fri, 30 Oct 2020 16:24:44 +0000 |
parents | cff70490dbec |
children | 9c62228ef17c |
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16:98ee8ba908d6 | 17:c92d5ec5d8d7 |
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105 <citations> | 105 <citations> |
106 <citation type="doi">10.1093/molbev/msz197</citation> | 106 <citation type="doi">10.1093/molbev/msz197</citation> |
107 <yield/> | 107 <yield/> |
108 </citations> | 108 </citations> |
109 </xml> | 109 </xml> |
110 <token name="@VERSION@">2.5.17</token> | 110 <token name="@VERSION@">2.5.21</token> |
111 <xml name="requirements"> | 111 <xml name="requirements"> |
112 <requirements> | 112 <requirements> |
113 <requirement type="package" version="@VERSION@">hyphy</requirement> | 113 <requirement type="package" version="@VERSION@">hyphy</requirement> |
114 <yield/> | 114 <yield/> |
115 </requirements> | 115 </requirements> |
116 </xml> | 116 </xml> |
117 <token name="@HYPHYMPI@">\${GALAXY_MPIRUN:-mpirun -np \${GALAXY_SLOTS:-1}} HYPHYMPI</token> | 117 <token name="@HYPHYMPI@">\${GALAXY_MPIRUN:-mpirun -mca orte_tmpdir_base "\${TMPDIR:-.}" -np \${GALAXY_SLOTS:-1}} HYPHYMPI</token> |
118 <token name="@CATCH_MPIERR@"><![CDATA[ | 118 <token name="@CATCH_MPIERR@"><![CDATA[ |
119 EC=\$? ; | 119 EC=\$? ; |
120 if [ \$EC -ne 0 ] ; then | 120 if [ \$EC -ne 0 ] ; then |
121 cat errors.log.mpinode0 >&2 ; | 121 cat errors.log.mpinode0 >&2 ; |
122 fi ; | 122 fi ; |