Mercurial > repos > iuc > hyphy_busted
comparison hyphy_busted.xml @ 24:e2f03a50aace draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
author | iuc |
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date | Tue, 20 Apr 2021 10:31:15 +0000 |
parents | c92d5ec5d8d7 |
children | 70fab57f3c05 |
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23:eb26b02af55a | 24:e2f03a50aace |
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1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
2 <tool id="hyphy_busted" name="HyPhy-BUSTED" version="@VERSION@+galaxy0" profile="19.09"> | 2 <tool id="hyphy_busted" name="HyPhy-BUSTED" version="@VERSION@+galaxy0" profile="19.09"> |
3 <description>Branch-site Unrestricted Statistical Test for Episodic Diversification</description> | 3 <description>Branch-site Unrestricted Statistical Test for Episodic Diversification</description> |
4 <macros> | 4 <macros> |
5 <import>macros.xml</import> | 5 <import>macros.xml</import> |
6 <token name="@OPERATION@">BUSTED</token> | |
7 <token name="@operation@">busted</token> | |
6 </macros> | 8 </macros> |
7 <expand macro="requirements"/> | 9 <expand macro="requirements"/> |
8 <command detect_errors="exit_code"><![CDATA[ | 10 <command detect_errors="exit_code"><![CDATA[ |
9 ln -s '$input_file' busted_input.fa && | 11 @SYMLINK_FILES@ |
10 ln -s '$input_nhx' busted_input.nhx && | |
11 hyphy busted | 12 hyphy busted |
12 --alignment ./busted_input.fa | 13 --alignment ./$input_file |
13 --tree ./busted_input.nhx | 14 #if $input_nhx: |
15 --tree ./input.nhx | |
16 #end if | |
14 --code $gencodeid | 17 --code $gencodeid |
15 --branches '$branches' | 18 --branches '$branches' |
16 --output '$busted_output' | 19 --output '$busted_output' |
17 > '$busted_log' | 20 > '$busted_log' ; |
21 @CATCH_ERROR@ | |
18 ]]></command> | 22 ]]></command> |
19 <inputs> | 23 <inputs> |
20 <expand macro="inputs"/> | 24 <expand macro="inputs"/> |
21 <expand macro="gencode"/> | 25 <expand macro="gencode"/> |
22 <expand macro="branches"/> | 26 <expand macro="branches"/> |